General information for g2694.t89
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2694 is located on chr_3: 19731670..19732668 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2694 | g2694.t89 | TTS | g2694.t89 | 19731095 | 19731095 |
| chr_3 | g2694 | g2694.t89 | isoform | g2694.t89 | 19731243 | 19731952 |
| chr_3 | g2694 | g2694.t89 | exon | g2694.t89.exon1 | 19731243 | 19731325 |
| chr_3 | g2694 | g2694.t89 | cds | g2694.t89.CDS1 | 19731243 | 19731325 |
| chr_3 | g2694 | g2694.t89 | exon | g2694.t89.exon2 | 19731401 | 19731614 |
| chr_3 | g2694 | g2694.t89 | cds | g2694.t89.CDS2 | 19731401 | 19731614 |
| chr_3 | g2694 | g2694.t89 | exon | g2694.t89.exon3 | 19731691 | 19731761 |
| chr_3 | g2694 | g2694.t89 | cds | g2694.t89.CDS3 | 19731691 | 19731761 |
| chr_3 | g2694 | g2694.t89 | exon | g2694.t89.exon4 | 19731907 | 19731952 |
| chr_3 | g2694 | g2694.t89 | cds | g2694.t89.CDS4 | 19731907 | 19731952 |
| chr_3 | g2694 | g2694.t89 | TSS | g2694.t89 | 19732010 | 19732010 |
Sequences
>g2694.t89 Gene=g2694 Length=414
ATGGCATTATCTATGCTTCTTCGTTCTTCATCAAGACTTTCACCAGTCTTAATGAACGCT
TCACGAATTAGTTGTGCGCCAGTAACTCCGATACTTGCAAATAAAATTGCCATCAATAAT
TCTAGACAAATTTCTGTAAGTCCTATTCGTCAGTCTGCAACGGGTAATCATGTAGCATTA
TGGCAAGCAGAAAGAGCACTATCAGTTGGGCTTTTGGGCATTGTTCCAGTTTCATTTTTG
ATTGAATCACAAGCTTCTGAATATCTTCTTTCACTCGCTCTCGTTATGCATTTTCATTGG
GGTTTGGAAGCACTCGTTACCGATTATGTTCCAGGACTTTTCATGATGGCTTATAAAGAT
CAAGGACTCGCAAAAACAACTCGCAAGATTTGGGCTATTCAACCAGCAAATTAA
>g2694.t89 Gene=g2694 Length=137
MALSMLLRSSSRLSPVLMNASRISCAPVTPILANKIAINNSRQISVSPIRQSATGNHVAL
WQAERALSVGLLGIVPVSFLIESQASEYLLSLALVMHFHWGLEALVTDYVPGLFMMAYKD
QGLAKTTRKIWAIQPAN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g2694.t89 | Gene3D | G3DSA:1.20.1300.10 | Fumarate reductase respiratory complex transmembrane subunits | 32 | 112 | 2.0E-19 |
| 2 | g2694.t89 | PANTHER | PTHR13337:SF2 | SUCCINATE DEHYDROGENASE [UBIQUINONE] CYTOCHROME B SMALL SUBUNIT, MITOCHONDRIAL | 1 | 111 | 5.8E-19 |
| 3 | g2694.t89 | PANTHER | PTHR13337 | SUCCINATE DEHYDROGENASE | 1 | 111 | 5.8E-19 |
| 1 | g2694.t89 | Pfam | PF05328 | CybS, succinate dehydrogenase cytochrome B small subunit | 45 | 111 | 3.5E-16 |
| 7 | g2694.t89 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 25 | - |
| 8 | g2694.t89 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 1 | - |
| 9 | g2694.t89 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 2 | 7 | - |
| 10 | g2694.t89 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 8 | 25 | - |
| 6 | g2694.t89 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 26 | 137 | - |
| 4 | g2694.t89 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 20 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0005740 | mitochondrial envelope | CC |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed