General information for g2699.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as ATP-dependent RNA helicase DHX8.
Parent gene
- The parent gene g2699 is located on chr_3: 19771563..19772689 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2699 | g2699.t2 | TTS | g2699.t2 | 19766607 | 19766607 |
| chr_3 | g2699 | g2699.t2 | isoform | g2699.t2 | 19767473 | 19768389 |
| chr_3 | g2699 | g2699.t2 | exon | g2699.t2.exon1 | 19767473 | 19768389 |
| chr_3 | g2699 | g2699.t2 | cds | g2699.t2.CDS1 | 19767776 | 19768186 |
| chr_3 | g2699 | g2699.t2 | TSS | g2699.t2 | NA | NA |
Sequences
>g2699.t2 Gene=g2699 Length=917
TTTATCGTCCAAAAGATAAGCAAGCATTAGCTGATCAGAAGAAAGCGAAATTCAATCAAG
TTGAGGGTGATCATTTAACATTATTGGCAGTTTATAATAGTTGGAAAAATAATAAATTTT
CAAATGCATGGTGTTATGAAAATTTTGTTCAAGTTAGAACATTGAAGCGTGCACAAGATG
TAAGGAAACAATTGCTTGGAATTATGGATAGACATAAACTTGACGTTGTATCGGCTGGTA
AAAATTCTGTAAGAATTCAAAAGACAATTTGCTCTGGTTTCTTTAGAAATGCAGCAAAAA
AAGATCCACAAGAGGGATATAGAACATTAGTTGATTCTCAAGTCGTATATATTCATCCTT
CAAGTGCATTATTCAACAGACAACCAGAATGGGTGATTTATCATGAATTAGTTCAAACGA
CAAAAGAATACATGCGTGAAGTTACAACAATTGATCCTAAATGGCTTGTAGAGTTTGCAT
CATCGTTCTTTAAATTTTCTGACCCAACAAAATTGAGTAAATTCAAGAAAAATCAACGAC
TTGAACCACTTTATAATAAATATGAAGAAGCCAACTCATGGAGAATTAGTCGTGTTCGTA
AACGAAGAAATTAAATTGTCAATGTGTATTGATTTATTACTGAATAAATACTTTAAAATT
TTTCTTTAATATGACAATATCGATATCTCAAAAAAAAAATTTATTTTAATGAACAAATTT
TATTCGCACAACAAAAATAATGTTTTGTTTTGTAAACATGAGCATAACGAATATTTAACG
AAAAAATTTTTTCTTTATTAGATTAAACAGAAAGGGTTTATTGGCTAATAATTAAATAGT
ATTCAAAGTAAGTTGAAAGCTATTAAATTTAATTAATAAATTCATTTATTTTTGATAGAA
AACTTAAGAACGAAACT
>g2699.t2 Gene=g2699 Length=136
MDRHKLDVVSAGKNSVRIQKTICSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQ
PEWVIYHELVQTTKEYMREVTTIDPKWLVEFASSFFKFSDPTKLSKFKKNQRLEPLYNKY
EEANSWRISRVRKRRN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g2699.t2 | PANTHER | PTHR18934 | ATP-DEPENDENT RNA HELICASE | 1 | 132 | 0 |
| 3 | g2699.t2 | PANTHER | PTHR18934:SF230 | - | 1 | 132 | 0 |
| 1 | g2699.t2 | Pfam | PF07717 | Oligonucleotide/oligosaccharide-binding (OB)-fold | 18 | 94 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
