Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative ATP-dependent RNA helicase DHX8.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2699 g2699.t4 isoform g2699.t4 19771024 19771563
chr_3 g2699 g2699.t4 exon g2699.t4.exon1 19771024 19771409
chr_3 g2699 g2699.t4 cds g2699.t4.CDS1 19771024 19771409
chr_3 g2699 g2699.t4 TTS g2699.t4 19771053 19771053
chr_3 g2699 g2699.t4 exon g2699.t4.exon2 19771470 19771563
chr_3 g2699 g2699.t4 cds g2699.t4.CDS2 19771470 19771563
chr_3 g2699 g2699.t4 TSS g2699.t4 NA NA

Sequences

>g2699.t4 Gene=g2699 Length=480
ATGGATGAATTAGAACAACTAGAACATCTTTCTTTAGTTTCAAAGATTTGCACAGAATTG
GAAAATCATTTATCTATAAACGACAAAGATTTGGCTGAATTTATAATTCATCTTGCCGAG
CAAAATCCTAATTTAGATGACTTTAGAAAGGCACTTGCACAAAATGGTGCAGAATTTAGT
GATTCATTTACTTCAAATCTTTTGCGTATTATATGTCTGATGAAACCATCAGTAAAAAAG
AAGTCGAATCAAACAATCACAATAGAAGGCGACTCATCAAAAAGTGCTCTTGCACTTAAA
TTTCCAGGACTAGCTATTCCAAATAAGAAAATAGACGATGATAGTGATGAGGACAATGAT
AAAAAGAAAACATCCGATAATATTGTTGATGATATGATGGCAGAATTAGAAGCAATGGCT
GCACCTCCATCGTCAAGTAAAACAATTGACGAAAAAAAAGAAAGAAAACGAAGCCGTTCT

>g2699.t4 Gene=g2699 Length=160
MDELEQLEHLSLVSKICTELENHLSINDKDLAEFIIHLAEQNPNLDDFRKALAQNGAEFS
DSFTSNLLRIICLMKPSVKKKSNQTITIEGDSSKSALALKFPGLAIPNKKIDDDSDEDND
KKKTSDNIVDDMMAELEAMAAPPSSSKTIDEKKERKRSRS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g2699.t4 MobiDBLite mobidb-lite consensus disorder prediction 108 160 -
g2699.t4 MobiDBLite mobidb-lite consensus disorder prediction 108 130 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed