General information for g2699.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2699 is located on chr_3: 19771563..19772689 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2699 | g2699.t6 | TTS | g2699.t6 | 19771053 | 19771053 |
| chr_3 | g2699 | g2699.t6 | isoform | g2699.t6 | 19771563 | 19772689 |
| chr_3 | g2699 | g2699.t6 | exon | g2699.t6.exon1 | 19771563 | 19771724 |
| chr_3 | g2699 | g2699.t6 | cds | g2699.t6.CDS1 | 19771692 | 19771724 |
| chr_3 | g2699 | g2699.t6 | exon | g2699.t6.exon2 | 19771804 | 19772689 |
| chr_3 | g2699 | g2699.t6 | cds | g2699.t6.CDS2 | 19771804 | 19772073 |
| chr_3 | g2699 | g2699.t6 | TSS | g2699.t6 | 19773699 | 19773699 |
Sequences
>g2699.t6 Gene=g2699 Length=1048
TTAAAAAATCATTTGTTTAACGAGTTCTACATTTTTCTTATAACATGCCAGAGAACACAG
TGGCACATTAGTTTTGCTACAACTGTATTTCTTTAAATTATTACAACCACTTATACTACA
TAAAACTGGTTTCGGAGGATCAATAGGCATTTTAGGTTGCACTATATTTGTATAATTTAT
AGGATAACTGAGAAATATACCACCTACAGTGTTTTTGTAAGAGATGACAGGATGATAGAA
TTTATTAGGTTTATTTTTAGTCGATTTGACCATTTTTGAGTCTTGCTTTTTAAGAATTCT
TTCCATAGTTTTCTTTTTATCCTTTTCGCGTTTCTCATCAGCTAACTTTTTTCGTTTTTG
TGCTTTCTCTTTTGATTTTTCAATATCTTCAGCTGTTAGAGGAAGTTTTTCTTTTCCTTT
TTTTACTTTGAAGTTAGGAAGCGCGAGTAATAGTTGTCCAGAACTGCTCACATTAGCTTG
TACACCATCAACAATTGTACTTTGGAAAGATGATTTTTTGGATTTGCTTGTGGGACTTGT
TGGACTGAATTCTGTGGTAGTTTTCTCATACATTGCACGTTGACGAGCTGTCATTAATTT
CGGATCTTTTGGTTTTATGTTTTTCAATTCTGAATCAACTTGCTCTAAAACACCTTTTTC
GATCGCTGACAACCATCTTTCCTCATCTGAACTTGTGTCATCTGGCTGCAATGATTTCTT
CTTCTTTTTGTCTTTTGATGTTTTCGGTGTGATTGGTGCTGAAGAAGTATTTGCTCCTGA
TTCTACAGAATCATCCAAATTAGATTGTTGTTCTTCATCTTGTTTCTTTTGTTTTTTAGA
TTTATATTTTTTACTTTTAACTTTTTTGCCATCATTATCTGAAACTCATTTGATTCTTCC
TTTCTTTTTGCCATCATAAATTTTTAAAAACTTTTGTCTACAGAATTATTTTTTGAGCTA
CAAATCTGAACACTGAGCAAAAAACAATAATAAAAACACTGAAAGATTTTTTTTAAACTT
TATTGATTTGTTTAGATCAGACAGACAA
>g2699.t6 Gene=g2699 Length=100
MFFNSESTCSKTPFSIADNHLSSSELVSSGCNDFFFFLSFDVFGVIGAEEVFAPDSTESS
KLDCCSSSCFFCFLDLYFLLLTFLPSLSETHLILPFFLPS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g2699.t6 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 33 | - |
| 4 | g2699.t6 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 34 | 52 | - |
| 1 | g2699.t6 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 53 | 63 | - |
| 5 | g2699.t6 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 64 | 84 | - |
| 2 | g2699.t6 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 85 | 100 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed