General information for g2702.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Peroxiredoxin-6.
Parent gene
- The parent gene g2702 is located on chr_3: 19773831..19774548 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2702 | g2702.t1 | TTS | g2702.t1 | 19773692 | 19773692 |
| chr_3 | g2702 | g2702.t1 | isoform | g2702.t1 | 19773831 | 19774548 |
| chr_3 | g2702 | g2702.t1 | exon | g2702.t1.exon1 | 19773831 | 19774367 |
| chr_3 | g2702 | g2702.t1 | cds | g2702.t1.CDS1 | 19773831 | 19774367 |
| chr_3 | g2702 | g2702.t1 | exon | g2702.t1.exon2 | 19774426 | 19774548 |
| chr_3 | g2702 | g2702.t1 | cds | g2702.t1.CDS2 | 19774426 | 19774548 |
| chr_3 | g2702 | g2702.t1 | TSS | g2702.t1 | 19774628 | 19774628 |
Sequences
>g2702.t1 Gene=g2702 Length=660
ATGAATATTGGTGATCAGTTTCCAAATTTCCATGCTAATACGACTGTAGGAGAGATCGAT
TTTCACGCATGGATAGGCGAATCTTGGGCAATTTTATTTTCTCATCCGGCAGATTTTACT
CCGGTGTGTACAACAGAACTCGCTAGAACAGCAAAACTCGTACCTGAGTTCAAAAAACGT
AATGTTAAATTAATTGCTTTGTCTTGTGATTCTGTTGAATCACATAATGGTTGGATCAAA
GATATAAAATCATTTGGAAATTTATCGGGTGATTTTCCATTTCCTATAATTGATGATGAA
AAACGTGAGCTTGCTGTCAAACTCAATATGCTCGATAAAGATGAAATTGGAAGCAAAGGT
TTGCCACTCACATGTAGAGCAGTTTTTATTATTGATGGCTCGAAAAAATTGAGAGCGTCG
CTTTTGTATCCTGCATCTTCAGGTCGAAATTTTGATGAAATTTTACGACTTGTTGATTCT
ATGCAACTTACAGACTTCAATAAAGTCGCAACCCCAGTTGATTGGAAAAAAGGAGACTAT
TGTATGGTACTGCCTACAGTCAAAAACGAAGAAATTCCCAAACTTTACCCTAAAGGTGTA
GAATTTGTAAATGTTCCATCTGGAAAGTCATATCTCAGAAAAACTCCATGTCCAGAATAA
>g2702.t1 Gene=g2702 Length=219
MNIGDQFPNFHANTTVGEIDFHAWIGESWAILFSHPADFTPVCTTELARTAKLVPEFKKR
NVKLIALSCDSVESHNGWIKDIKSFGNLSGDFPFPIIDDEKRELAVKLNMLDKDEIGSKG
LPLTCRAVFIIDGSKKLRASLLYPASSGRNFDEILRLVDSMQLTDFNKVATPVDWKKGDY
CMVLPTVKNEEIPKLYPKGVEFVNVPSGKSYLRKTPCPE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g2702.t1 | CDD | cd03016 | PRX_1cys | 3 | 216 | 0.000 |
| 7 | g2702.t1 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 1 | 149 | 0.000 |
| 6 | g2702.t1 | Gene3D | G3DSA:3.30.1020.10 | Antioxidant | 150 | 218 | 0.000 |
| 3 | g2702.t1 | PANTHER | PTHR43503:SF12 | PEROXIREDOXIN PRX1, PUTATIVE-RELATED | 2 | 218 | 0.000 |
| 4 | g2702.t1 | PANTHER | PTHR43503 | MCG48959-RELATED | 2 | 218 | 0.000 |
| 9 | g2702.t1 | PIRSF | PIRSF000239 | AHPC | 1 | 216 | 0.000 |
| 2 | g2702.t1 | Pfam | PF00578 | AhpC/TSA family | 3 | 139 | 0.000 |
| 1 | g2702.t1 | Pfam | PF10417 | C-terminal domain of 1-Cys peroxiredoxin | 160 | 199 | 0.000 |
| 8 | g2702.t1 | ProSiteProfiles | PS51352 | Thioredoxin domain profile. | 1 | 163 | 17.155 |
| 5 | g2702.t1 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 2 | 215 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016209 | antioxidant activity | MF |
| GO:0055114 | NA | NA |
| GO:0051920 | peroxiredoxin activity | MF |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K11188 (peroxiredoxin 6 [EC:1.11.1.7 1.11.1.27 3.1.1.-])
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
