General information for g2705.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Transcription initiation factor TFIID subunit 9B.
Parent gene
- The parent gene g2705 is located on chr_3: 19777839..19778373 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2705 | g2705.t1 | TSS | g2705.t1 | 19777792 | 19777792 |
| chr_3 | g2705 | g2705.t1 | isoform | g2705.t1 | 19777839 | 19778373 |
| chr_3 | g2705 | g2705.t1 | exon | g2705.t1.exon1 | 19777839 | 19777927 |
| chr_3 | g2705 | g2705.t1 | cds | g2705.t1.CDS1 | 19777839 | 19777927 |
| chr_3 | g2705 | g2705.t1 | exon | g2705.t1.exon2 | 19777985 | 19778083 |
| chr_3 | g2705 | g2705.t1 | cds | g2705.t1.CDS2 | 19777985 | 19778083 |
| chr_3 | g2705 | g2705.t1 | exon | g2705.t1.exon3 | 19778148 | 19778373 |
| chr_3 | g2705 | g2705.t1 | cds | g2705.t1.CDS3 | 19778148 | 19778373 |
| chr_3 | g2705 | g2705.t1 | TTS | g2705.t1 | 19778406 | 19778406 |
Sequences
>g2705.t1 Gene=g2705 Length=414
ATGGAAGTATTAAAACAAAATTTTAAGAAACAAAATACTCAATTTATATCTTCACCTAAG
AATTCTATGGTTGTGGAAGCAATTTTACGTGAAGCTAATTGCAATGATTATGAAACTTTC
ATAATTAATCAAATGCTGCAGTTTACTTATCGTTATGTCAGTACAATTCTAATTCTAGGA
GATGCAAAAGAATTTGCTCAATATTGTGGCAGAAATGATGTGATTCTTGAAGACGTTAAA
TTTGCAATGACAATGATGAATGACAAAATAGCGAAACCAATACCAAGGGAAGTTCTTTTT
GAACTGACCAAACAAAAAAATATGAAACCATTGCCACCAATTACAGATTTGCGCATTCGT
TTACCAATTTGTACTCATTGCTTACTCGCTCCCAACTATATAAGACGCAAATAA
>g2705.t1 Gene=g2705 Length=137
MEVLKQNFKKQNTQFISSPKNSMVVEAILREANCNDYETFIINQMLQFTYRYVSTILILG
DAKEFAQYCGRNDVILEDVKFAMTMMNDKIAKPIPREVLFELTKQKNMKPLPPITDLRIR
LPICTHCLLAPNYIRRK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g2705.t1 | CDD | cd07979 | TAF9 | 19 | 134 | 0 |
| 5 | g2705.t1 | Gene3D | G3DSA:1.10.20.10 | Histone | 19 | 87 | 0 |
| 2 | g2705.t1 | PANTHER | PTHR48068:SF4 | TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR | 16 | 133 | 0 |
| 3 | g2705.t1 | PANTHER | PTHR48068 | TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR | 16 | 133 | 0 |
| 1 | g2705.t1 | Pfam | PF02291 | Transcription initiation factor IID, 31kD subunit | 18 | 133 | 0 |
| 4 | g2705.t1 | SUPERFAMILY | SSF47113 | Histone-fold | 22 | 86 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0046982 | protein heterodimerization activity | MF |
| GO:0006352 | DNA-templated transcription, initiation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
