General information for g2722.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative UDP-glucuronosyltransferase 1-8.
Parent gene
- The parent gene g2722 is located on chr_3: 19895185..19896790 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2722 | g2722.t1 | TTS | g2722.t1 | 19895114 | 19895114 |
| chr_3 | g2722 | g2722.t1 | isoform | g2722.t1 | 19895185 | 19896790 |
| chr_3 | g2722 | g2722.t1 | exon | g2722.t1.exon1 | 19895185 | 19896220 |
| chr_3 | g2722 | g2722.t1 | cds | g2722.t1.CDS1 | 19895185 | 19896220 |
| chr_3 | g2722 | g2722.t1 | exon | g2722.t1.exon2 | 19896279 | 19896361 |
| chr_3 | g2722 | g2722.t1 | cds | g2722.t1.CDS2 | 19896279 | 19896361 |
| chr_3 | g2722 | g2722.t1 | exon | g2722.t1.exon3 | 19896414 | 19896598 |
| chr_3 | g2722 | g2722.t1 | cds | g2722.t1.CDS3 | 19896414 | 19896598 |
| chr_3 | g2722 | g2722.t1 | exon | g2722.t1.exon4 | 19896664 | 19896790 |
| chr_3 | g2722 | g2722.t1 | cds | g2722.t1.CDS4 | 19896664 | 19896790 |
| chr_3 | g2722 | g2722.t1 | TSS | g2722.t1 | 19896942 | 19896942 |
Sequences
>g2722.t1 Gene=g2722 Length=1431
ATGTTCAGTTTAGCAGAGTATTTTCATAATGTGACTGTTGTGTCGCCTTATCCTGTTAAA
AAACCATTACATTTCTATGATGAAGTTAGTTTAGAATCAAATTTATATGATGCTGAATTC
TATGCGGCGGAAATTCCAAGTATTTTAAACATTGAACAAATTCCATTTATCTCAAGTCTT
CGATATTTTTATGAATCGGGGGAAGACACTGTGAATTATGTTTTAACACATCCAAATATG
ATTGAATTAATGAAAAGTGGAAAAAAGTTTGATGCGTGCATCATTGAAAATTCTCATTTT
GAAGCTTTGATGGGTTTAGCTGAAATTTTTGAATGTGTTCTTATTACTTACACTACTTAT
CCTTCAGTTCATTTAATTGATCGAATGACAGGAAACATCTCACCAACGTCATTTGTACCA
AATTCTTTACTAGAATACACTGACACTATGAATTTTAAGGAAAGATTTTTCAACACACTC
AACACTTTAATGGAGAAAATTTTCTATGAGTTTTATCATTTACCAAATCAAAAGAGACTT
TATGAAAAGTTTTTCCCAAATGCACACCATTCATTCTATGATGTATATAAAAATTCATCA
ATAATTTTTATCAACAACAATGTTGTAATTTCATCACCACGTCCATATTTGCCAAACATG
ATAGACATTGGGGGCATTCATGTTAGTCAACCAAAACCTTTGAAGAAAAAATTACAAAAA
TTTCTCGACACTGCAAATGATGGAGTGATAATTTTTTCAATGGGCTCACTATTGCAAGGC
TCAGATTGGGATGATGTTCAGAGAGAAGCATTTATCGAAGCTTTTAGAGAATTGAAGCAA
AAAGTTTTGTGGAAATATGAAAATGAAACTCTTCCAAATAAACCTTCAAATGTTAAAATC
AGTAAATGGTTGCCTCAAAGTGATGTATTAGCACATGAGAACGTTAAGCTTTTCATTACA
CATGCAGGTTTGCTTGGATCAACCGAAGCTTTAATTCACAGTGTTCCAATGCTCGCAATA
CCAATGTTTGGTGATCAACATATGAATGCAGCAAATGCTGTTGTTCGCGGTTATGGTTTA
CAGCTTGATTATAAAAATTTAACAAAGGATAAAATTAGTGATGCAATCAATGAAATGCTA
TCAAATGAAAAATACCAAATCAATGCCAAACTTTGGTCAAGTAGATTTAAAGATCGTCCA
ATCACTCCAAAATTATCTGTAATTTATTGGACAAAATATGCTGTCAAACATAAAGGAGCT
TTTCATTTAAGAACTACTGGAAATGAATTAAGTTTTATCGAGTTGTATTCTTTAGATGTT
TTAATTTCAATGTTTGCAATCTTCTTCACCATAATATTTGTGTGCTGTAAAATTTTTATA
AAAATATTTAAGCCATTCAGCTCAAGAAATCAAAAAGTAAAGCAACAATAA
>g2722.t1 Gene=g2722 Length=476
MFSLAEYFHNVTVVSPYPVKKPLHFYDEVSLESNLYDAEFYAAEIPSILNIEQIPFISSL
RYFYESGEDTVNYVLTHPNMIELMKSGKKFDACIIENSHFEALMGLAEIFECVLITYTTY
PSVHLIDRMTGNISPTSFVPNSLLEYTDTMNFKERFFNTLNTLMEKIFYEFYHLPNQKRL
YEKFFPNAHHSFYDVYKNSSIIFINNNVVISSPRPYLPNMIDIGGIHVSQPKPLKKKLQK
FLDTANDGVIIFSMGSLLQGSDWDDVQREAFIEAFRELKQKVLWKYENETLPNKPSNVKI
SKWLPQSDVLAHENVKLFITHAGLLGSTEALIHSVPMLAIPMFGDQHMNAANAVVRGYGL
QLDYKNLTKDKISDAINEMLSNEKYQINAKLWSSRFKDRPITPKLSVIYWTKYAVKHKGA
FHLRTTGNELSFIELYSLDVLISMFAIFFTIIFVCCKIFIKIFKPFSSRNQKVKQQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g2722.t1 | CDD | cd03784 | GT1_Gtf-like | 9 | 394 | 6.52337E-60 |
| 5 | g2722.t1 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 229 | 398 | 2.6E-47 |
| 2 | g2722.t1 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 9 | 462 | 8.0E-111 |
| 3 | g2722.t1 | PANTHER | PTHR48043:SF59 | UDP-GLUCURONOSYLTRANSFERASE | 9 | 462 | 8.0E-111 |
| 1 | g2722.t1 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 66 | 472 | 1.3E-80 |
| 7 | g2722.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 439 | - |
| 8 | g2722.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 440 | 460 | - |
| 6 | g2722.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 461 | 476 | - |
| 11 | g2722.t1 | ProSitePatterns | PS00375 | UDP-glycosyltransferases signature. | 303 | 346 | - |
| 4 | g2722.t1 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 4 | 423 | 2.86E-94 |
| 10 | g2722.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 441 | 463 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00699 (glucuronosyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed