General information for g2726.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Probable arginine–tRNA ligase, cytoplasmic.
Parent gene
- The parent gene g2726 is located on chr_3: 19903103..19911408 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2726 | g2726.t7 | isoform | g2726.t7 | 19902417 | 19903103 |
| chr_3 | g2726 | g2726.t7 | exon | g2726.t7.exon1 | 19902417 | 19903103 |
| chr_3 | g2726 | g2726.t7 | cds | g2726.t7.CDS1 | 19902687 | 19903103 |
| chr_3 | g2726 | g2726.t7 | TTS | g2726.t7 | 19903172 | 19903172 |
| chr_3 | g2726 | g2726.t7 | TSS | g2726.t7 | NA | NA |
Sequences
>g2726.t7 Gene=g2726 Length=687
AAAATTCGTATTGATCACTTAGGTTTTGGCGTTGTACTTGGTGAAGATGGCAAAAAATTT
AAAACTCGTTCAGGTGATACTGTTAAACTTTCGGATTTACTTGAAGAGGGTACACGACGA
TCATTAGAAAAACTTAAAGAAAAAGAAAGAGATAAGATTTTGAATGAACAAGAAATAATT
GATGCTACCAATAATGTTGCATATGGATGCATTAAATATGCTGATTTATCCAAGAGTTCT
AGAAATGACTATGTTTTCAGTTTCGATCGAATGTTGGATGACCGAGGAAATACTGCCGTT
TATTTATTGTATGCATATGTTCGCATTTGCTCAATTGCACGCAATTTGGGAGAAGAATTT
AATAAGCAGATGCCTAAACTAAAAAAAGAAACACCTATTGTACTTGACCATGAAAAGGAA
TGGAAATTAGCAAAAGTTTTGATTCAATTTCCTGATATCATTGAGAAAATTTTGCGAGAA
TTGAATATTCACTATTTGTGCGATTTTCTCTATCATATTGCCACTACATTTACAGAATTT
TACGATTCTTGCTATTGTATTCAAAAGAACAAGCAAGGAGAAGTTGTCAAAATTGATGTA
AGTCGAGTGCTCTTATGTGAAGCAACAGCAGCAATCATGGCTCAATGCTTCGATATCCTT
GGCATTAAAACATTAAAGAAAGTTTAA
>g2726.t7 Gene=g2726 Length=138
MLDDRGNTAVYLLYAYVRICSIARNLGEEFNKQMPKLKKETPIVLDHEKEWKLAKVLIQF
PDIIEKILRELNIHYLCDFLYHIATTFTEFYDSCYCIQKNKQGEVVKIDVSRVLLCEATA
AIMAQCFDILGIKTLKKV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g2726.t7 | Gene3D | G3DSA:1.10.730.10 | - | 6 | 138 | 0 |
| 2 | g2726.t7 | PANTHER | PTHR11956 | ARGINYL-TRNA SYNTHETASE | 1 | 137 | 0 |
| 3 | g2726.t7 | PANTHER | PTHR11956:SF5 | ARGININE–TRNA LIGASE, CYTOPLASMIC-RELATED | 1 | 137 | 0 |
| 1 | g2726.t7 | Pfam | PF05746 | DALR anticodon binding domain | 12 | 137 | 0 |
| 5 | g2726.t7 | SMART | SM00836 | dalr_1_4 | 12 | 138 | 0 |
| 4 | g2726.t7 | SUPERFAMILY | SSF47323 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 6 | 137 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004814 | arginine-tRNA ligase activity | MF |
| GO:0005524 | ATP binding | MF |
| GO:0006418 | tRNA aminoacylation for protein translation | BP |
| GO:0000166 | nucleotide binding | MF |
| GO:0004812 | aminoacyl-tRNA ligase activity | MF |
| GO:0006420 | arginyl-tRNA aminoacylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
