Gene loci information

Transcript annotation

  • This transcript has been annotated as Enoyl-[acyl-carrier-protein] reductase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2741 g2741.t1 TSS g2741.t1 19945093 19945093
chr_3 g2741 g2741.t1 isoform g2741.t1 19945151 19946248
chr_3 g2741 g2741.t1 exon g2741.t1.exon1 19945151 19945331
chr_3 g2741 g2741.t1 cds g2741.t1.CDS1 19945151 19945331
chr_3 g2741 g2741.t1 exon g2741.t1.exon2 19945389 19946248
chr_3 g2741 g2741.t1 cds g2741.t1.CDS2 19945389 19946248
chr_3 g2741 g2741.t1 TTS g2741.t1 19946325 19946325

Sequences

>g2741.t1 Gene=g2741 Length=1041
ATGTTGATTTTAAGGCGAAGAATGAGTTGTTTAGCATCAGTTTTGAGATATTCTGATTAT
GGTGAACCGGCAAATGTTATCAAAATGTGTAAAGAACAATTGGAAGCACCAAAAGATGAC
AATTTGTTAGTAAAAATAGTTTATGCACCAATAAATCCAGCGGATATAAATACAATTCAA
GGAAAATATCCAGTTAAGCCAGAATTTCCTGCAGTAGGTGGTAATGAGTGTGTTGCTCAA
GTTATGGAACTTGGTTCAAATGTCAAATCTTTTTCTGTTGGCGATATTGTTCTTCCACTT
GCCACTGGATTAGGTACATGGAGAACTCATGCAATCTATAAAGAAAATGAACTAATAAAA
GTCCCAAAAGAAGTGCCTTTAGTTGAGGCAGCAACAATGAGTGTGAATAAATGCACGGCA
TATCGTATGATTAAAGATTTTGTCGAATTGAAAGCTGGTGATACTTTAATTCAAAATGGT
GCAAATAGTGCAGTTGGTCAAGATGTAATACAATTATGTAAAATTTGGGGAATTAACAAT
GTTGGAATTGTAAGAGATCGTCCAGAAATTGATCAACTTAAAGAATATTTGAAAGAATTG
GGTGCAACAGAGATTCTTACAGAAGAGCAATGTAGAGCAACAAAAATTTTCAAAGAAGGT
AAACTACCAAAACCAAAACTTGCATTGAATTGTGTAGGAGGAAAGAATTCATTGGAAATG
TCGAAGCATATGGGTCAGAGAGGAGTGATGGTCACATATGGAGGAATGTCAAGAGAACCA
GTTTTAGTACCAACATCAGCTCTTATATTTAAAGATCATGAATTTAAAGGATTTTGGATG
ACTCGATGGAAAGCTGAAAAAGGAAAATCAGATGAAGCTATTAAAATGGCAACAGATCTG
TTTAACTTTATGAAAGATGGAAAATTAAAAGCACCAAAACATGAACTAATACCGTACGAA
AATTACAAACAAGCATTTGAAAATGTATTGAGTTTAAAAGGATTTGCTGGAGCAAAGGTT
ATTTTAGATTTTTCCAAGTAA

>g2741.t1 Gene=g2741 Length=346
MLILRRRMSCLASVLRYSDYGEPANVIKMCKEQLEAPKDDNLLVKIVYAPINPADINTIQ
GKYPVKPEFPAVGGNECVAQVMELGSNVKSFSVGDIVLPLATGLGTWRTHAIYKENELIK
VPKEVPLVEAATMSVNKCTAYRMIKDFVELKAGDTLIQNGANSAVGQDVIQLCKIWGINN
VGIVRDRPEIDQLKEYLKELGATEILTEEQCRATKIFKEGKLPKPKLALNCVGGKNSLEM
SKHMGQRGVMVTYGGMSREPVLVPTSALIFKDHEFKGFWMTRWKAEKGKSDEAIKMATDL
FNFMKDGKLKAPKHELIPYENYKQAFENVLSLKGFAGAKVILDFSK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g2741.t1 CDD cd08290 ETR 12 344 0e+00
9 g2741.t1 Gene3D G3DSA:3.90.180.10 - 15 327 0e+00
8 g2741.t1 Gene3D G3DSA:3.40.50.720 - 134 310 0e+00
3 g2741.t1 PANTHER PTHR43981 ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE, MITOCHONDRIAL 11 332 0e+00
4 g2741.t1 PANTHER PTHR43981:SF2 ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE, MITOCHONDRIAL 11 332 0e+00
2 g2741.t1 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 40 99 3e-07
1 g2741.t1 Pfam PF00107 Zinc-binding dehydrogenase 164 284 0e+00
7 g2741.t1 SMART SM00829 PKS_ER_names_mod 21 342 5e-07
6 g2741.t1 SUPERFAMILY SSF50129 GroES-like 16 170 0e+00
5 g2741.t1 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 126 308 0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055114 NA NA
GO:0016491 oxidoreductase activity MF

KEGG

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values