General information for g2741.t4
Yuki Yoshida
6/2/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Enoyl-[acyl-carrier-protein] reductase, mitochondrial.
Parent gene
- The parent gene g2741 is located on chr_3: 19945339..19946248 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2741 | g2741.t4 | TSS | g2741.t4 | 19945093 | 19945093 |
| chr_3 | g2741 | g2741.t4 | isoform | g2741.t4 | 19945339 | 19946248 |
| chr_3 | g2741 | g2741.t4 | exon | g2741.t4.exon1 | 19945339 | 19946248 |
| chr_3 | g2741 | g2741.t4 | cds | g2741.t4.CDS1 | 19945451 | 19946248 |
| chr_3 | g2741 | g2741.t4 | TTS | g2741.t4 | 19946325 | 19946325 |
Sequences
>g2741.t4 Gene=g2741 Length=910
TCTAGATTAATTAGGAATGAATCAATGATGATTTAAATTCAATATTTTAGGAAAATATCC
AGTTAAGCCAGAATTTCCTGCAGTAGGTGGTAATGAGTGTGTTGCTCAAGTTATGGAACT
TGGTTCAAATGTCAAATCTTTTTCTGTTGGCGATATTGTTCTTCCACTTGCCACTGGATT
AGGTACATGGAGAACTCATGCAATCTATAAAGAAAATGAACTAATAAAAGTCCCAAAAGA
AGTGCCTTTAGTTGAGGCAGCAACAATGAGTGTGAATAAATGCACGGCATATCGTATGAT
TAAAGATTTTGTCGAATTGAAAGCTGGTGATACTTTAATTCAAAATGGTGCAAATAGTGC
AGTTGGTCAAGATGTAATACAATTATGTAAAATTTGGGGAATTAACAATGTTGGAATTGT
AAGAGATCGTCCAGAAATTGATCAACTTAAAGAATATTTGAAAGAATTGGGTGCAACAGA
GATTCTTACAGAAGAGCAATGTAGAGCAACAAAAATTTTCAAAGAAGGTAAACTACCAAA
ACCAAAACTTGCATTGAATTGTGTAGGAGGAAAGAATTCATTGGAAATGTCGAAGCATAT
GGGTCAGAGAGGAGTGATGGTCACATATGGAGGAATGTCAAGAGAACCAGTTTTAGTACC
AACATCAGCTCTTATATTTAAAGATCATGAATTTAAAGGATTTTGGATGACTCGATGGAA
AGCTGAAAAAGGAAAATCAGATGAAGCTATTAAAATGGCAACAGATCTGTTTAACTTTAT
GAAAGATGGAAAATTAAAAGCACCAAAACATGAACTAATACCGTACGAAAATTACAAACA
AGCATTTGAAAATGTATTGAGTTTAAAAGGATTTGCTGGAGCAAAGGTTATTTTAGATTT
TTCCAAGTAA
>g2741.t4 Gene=g2741 Length=265
MELGSNVKSFSVGDIVLPLATGLGTWRTHAIYKENELIKVPKEVPLVEAATMSVNKCTAY
RMIKDFVELKAGDTLIQNGANSAVGQDVIQLCKIWGINNVGIVRDRPEIDQLKEYLKELG
ATEILTEEQCRATKIFKEGKLPKPKLALNCVGGKNSLEMSKHMGQRGVMVTYGGMSREPV
LVPTSALIFKDHEFKGFWMTRWKAEKGKSDEAIKMATDLFNFMKDGKLKAPKHELIPYEN
YKQAFENVLSLKGFAGAKVILDFSK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g2741.t4 | CDD | cd08290 | ETR | 1 | 263 | 0 |
| 6 | g2741.t4 | Gene3D | G3DSA:3.40.50.720 | - | 53 | 228 | 0 |
| 2 | g2741.t4 | PANTHER | PTHR43981 | ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE, MITOCHONDRIAL | 2 | 259 | 0 |
| 3 | g2741.t4 | PANTHER | PTHR43981:SF2 | ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE, MITOCHONDRIAL | 2 | 259 | 0 |
| 1 | g2741.t4 | Pfam | PF00107 | Zinc-binding dehydrogenase | 83 | 203 | 0 |
| 5 | g2741.t4 | SUPERFAMILY | SSF50129 | GroES-like | 2 | 50 | 0 |
| 4 | g2741.t4 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 45 | 227 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
## [1] "No matching GO terms"KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
