General information for g2752.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2752 is located on chr_3: 19985092..19985953 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2752 | g2752.t1 | isoform | g2752.t1 | 19983655 | 19985953 |
| chr_3 | g2752 | g2752.t1 | exon | g2752.t1.exon1 | 19983655 | 19985010 |
| chr_3 | g2752 | g2752.t1 | cds | g2752.t1.CDS1 | 19983655 | 19985010 |
| chr_3 | g2752 | g2752.t1 | TTS | g2752.t1 | 19983690 | 19983690 |
| chr_3 | g2752 | g2752.t1 | exon | g2752.t1.exon2 | 19985069 | 19985953 |
| chr_3 | g2752 | g2752.t1 | cds | g2752.t1.CDS2 | 19985069 | 19985953 |
| chr_3 | g2752 | g2752.t1 | TSS | g2752.t1 | 19986036 | 19986036 |
Sequences
>g2752.t1 Gene=g2752 Length=2241
ATGTCATCGGATGAAGAAACAGAAGTGATAAGTTCATCACATAAAAAACTTTTGTCAGAA
ATCAATGACATCGTAAAATTTCAACATATTAAAAAGCCCAAAAGATCAGAACCGGCAATC
AAAAATGACGAATTTCATTTGGTGAAAACCAAAAATCTTCTTGACAATGAGAAAGCTGAA
GAAGGAGCGAAAAAGCGTGATAAAAAAAGTGTATCAATACAATCGGTTGCAAATATTGTA
CGAAAAACACCAACACAAAAGAAAATCAGCAATCAATTTCAAGACACTTTTAAACAATCG
AAAGTCCTCAATAAACCATTGGAAAAAGTATATGCCGAGAGAATTCAAAGATCTGTAGGC
TATGAAAATGTAAAAACAAGTTTATCTAGATGGGATGCAATAGTAACAAAAAATAAAAAT
GCTGATCAATTACGATTCCCAATAATACAAGAAAAGGCTCCTGTCGAGCATAAGAAAGCT
TTAGATTTTTCACAATTTAGATATAAAACTCAAATGATGAAAGAAATGGAAGAGATTCAC
AATCAATGTTTTCCAAAATTATCCGAAAATGAATCTAATGAACCTTCATCAGAACTCTTA
ACACTTGAAGAAATGAAAGAAAGGAGAAAAGAATTAGCAAGACTTAAATTAAGAGAATCA
CATCAAATAGCTAAAAAACGTTTGCAAGGAAAGATTAAAAGTAAAAAATATCATAGATTG
AAGAAAAAAGAGGAGATGAAAAAGAAACTCAAAGAGTTTGAAGAACTCAAAATATCAAAT
CCTGAAGCTGCCCTGAAAGAGCTTGAAAAAATTGAAAAAGAAAGAGTGAAAGAGCGAGCA
AGTCTTAGACATAAAAATACTGGTACTTGGGCCAAAAGCATGAAGATAAGGGCTCAATAT
GATACGACAGCAAAAAAAGAACTTGAAGCACAGTTGGCACTTGGTCGTGAATTAACTCAA
AAAGATAAGCAAAGTGATTCAACTGACTCTGATGAAGACGAGGTTTCAACAACTATCAAT
GATACAAAGGATACTGAAAATCCATGGCTTTCTAACAATGATAATAAAGAAATAGATCCA
CTCGATGATATTTTCAGTGGTTATAGAAAATTTTGGAAACAAAAGAATGAAAATGAAGAA
GCATTACAGAGATTAAAGAAAGCTTCTGCTTCTAATAGACAAGATGATGATCAAGAACAA
GAAGAAATGTCTCTACATTCAAACCAAGAAGAAGCTTCGATAGGTCAAGGAAGTGACAGC
GAATCTGACGATTCTAGTGAAAGTGATGGCGACGAAACAAATGCATCAAATTTTATTAAT
GATTTATTTGATGCTGCTGAAGAGAAAATAGAAGAGAAACTAGAATCAAAGATCAAAAAT
CTTAAACCGCATCTGATGGAAGCAGATGCTGTAAAAACAAAAAATCATAAAGAAACTGTT
AAAGGAAAGAAAAGAAAAAGAAATTTTGATGTTAATGATCCTCGTTATTTAGAATTTTCA
AGGGAAACGAAATTAGGAGATATCGATGAAGCTCTTATGGAAGGAAAAGAAACTGATGAA
AGAGAAGTTCTTCCTCCATCGAAAAAAGTATTGAATGAAATTAAAACAATTAAAAGTCAA
AAGAAAGCTTTTATGCGAGGTACAACAGATGAAATTGATCCAAATGCATTTTTAGTTGTA
AAGTCAAAACATCTAATTACCGCATTACCTAAAAATCAAGAATTTGATGAAATTGATGAG
GAAGAAGAACTTGAAAATTTACAATCAGCAAATAAAATGAGTTTAGCTGAAGCATTTGAA
AATGATGACATAATTGATGATTTCGTGGCAGAGTTAGAAGAAGAAGAAAAGGCACAACAA
AAAGATGATAATAGTGTTCTACCAGGATGGGGAAGTTGGGGTGGTGAAGGAGTTAAAAAT
GTTGAAAAGTCAAAAAAGACTGTACCCATTGTGAAAAAGAAAGATCGTGTAATAATCAAC
ACGAAAGTAAATGATAAACTTAAAAAGCACTTGATTTCAGCTCTTCCATTTCCGTTTACG
ACTATCAAAGATTTTCAAGCATCTATGCGCTATCCTATCGGTAAAGATTTTGTTCCGGCA
GCTGCTCACAGTAAATTAACTGAATCAAGCTTTGTAACAAAAGCTGGCACAATTATTGAG
CCTATGACAGAAGAAGTGTTAGTTCAGAGTAACACAAAGCATAAAAGAAAAAAAGGGAAA
TTTATTAAAAGGAAAAAATAA
>g2752.t1 Gene=g2752 Length=746
MSSDEETEVISSSHKKLLSEINDIVKFQHIKKPKRSEPAIKNDEFHLVKTKNLLDNEKAE
EGAKKRDKKSVSIQSVANIVRKTPTQKKISNQFQDTFKQSKVLNKPLEKVYAERIQRSVG
YENVKTSLSRWDAIVTKNKNADQLRFPIIQEKAPVEHKKALDFSQFRYKTQMMKEMEEIH
NQCFPKLSENESNEPSSELLTLEEMKERRKELARLKLRESHQIAKKRLQGKIKSKKYHRL
KKKEEMKKKLKEFEELKISNPEAALKELEKIEKERVKERASLRHKNTGTWAKSMKIRAQY
DTTAKKELEAQLALGRELTQKDKQSDSTDSDEDEVSTTINDTKDTENPWLSNNDNKEIDP
LDDIFSGYRKFWKQKNENEEALQRLKKASASNRQDDDQEQEEMSLHSNQEEASIGQGSDS
ESDDSSESDGDETNASNFINDLFDAAEEKIEEKLESKIKNLKPHLMEADAVKTKNHKETV
KGKKRKRNFDVNDPRYLEFSRETKLGDIDEALMEGKETDEREVLPPSKKVLNEIKTIKSQ
KKAFMRGTTDEIDPNAFLVVKSKHLITALPKNQEFDEIDEEEELENLQSANKMSLAEAFE
NDDIIDDFVAELEEEEKAQQKDDNSVLPGWGSWGGEGVKNVEKSKKTVPIVKKKDRVIIN
TKVNDKLKKHLISALPFPFTTIKDFQASMRYPIGKDFVPAAAHSKLTESSFVTKAGTIIE
PMTEEVLVQSNTKHKRKKGKFIKRKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g2752.t1 | Coils | Coil | Coil | 202 | 222 | - |
| 7 | g2752.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 360 | - |
| 5 | g2752.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 340 | - |
| 6 | g2752.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 406 | - |
| 8 | g2752.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 440 | - |
| 4 | g2752.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 407 | 421 | - |
| 2 | g2752.t1 | PANTHER | PTHR14150 | U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 14 | 2 | 737 | 4.3E-111 |
| 3 | g2752.t1 | PANTHER | PTHR14150:SF12 | U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 14 HOMOLOG A-RELATED | 2 | 737 | 4.3E-111 |
| 1 | g2752.t1 | Pfam | PF04615 | Utp14 protein | 5 | 724 | 2.1E-106 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0032040 | small-subunit processome | CC |
| GO:0006364 | rRNA processing | BP |
KEGG
Orthology
- This transcript has been annotated with K14567 (U3 small nucleolar RNA-associated protein 14)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
