General information for g2752.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2752 is located on chr_3: 19985092..19985953 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2752 | g2752.t4 | isoform | g2752.t4 | 19983608 | 19984378 |
| chr_3 | g2752 | g2752.t4 | exon | g2752.t4.exon1 | 19983608 | 19984378 |
| chr_3 | g2752 | g2752.t4 | TTS | g2752.t4 | 19983619 | 19983619 |
| chr_3 | g2752 | g2752.t4 | cds | g2752.t4.CDS1 | 19983655 | 19984359 |
| chr_3 | g2752 | g2752.t4 | TSS | g2752.t4 | NA | NA |
Sequences
>g2752.t4 Gene=g2752 Length=771
AGATATCGATGAAGCTCTTATGGAAGGAAAAGAAACTGATGAAAGAGAAGTTCTTCCTCC
ATCGAAAAAAGTATTGAATGAAATTAAAACAATTAAAAGTCAAAAGAAAGCTTTTATGCG
AGGTACAACAGATGAAATTGATCCAAATGCATTTTTAGTTGTAAAGTCAAAACATCTAAT
TACCGCATTACCTAAAAATCAAGAATTTGATGAAATTGATGAGGAAGAAGAACTTGAAAA
TTTACAATCAGCAAATAAAATGAGTTTAGCTGAAGCATTTGAAAATGATGACATAATTGA
TGATTTCGTGGCAGAGTTAGAAGAAGAAGAAAAGGCACAACAAAAAGATGATAATAGTGT
TCTACCAGGATGGGGAAGTTGGGGTGGTGAAGGAGTTAAAAATGTTGAAAAGTCAAAAAA
GACTGTACCCATTGTGAAAAAGAAAGATCGTGTAATAATCAACACGAAAGTAAATGATAA
ACTTAAAAAGCACTTGATTTCAGCTCTTCCATTTCCGTTTACGACTATCAAAGATTTTCA
AGCATCTATGCGCTATCCTATCGGTAAAGATTTTGTTCCGGCAGCTGCTCACAGTAAATT
AACTGAATCAAGCTTTGTAACAAAAGCTGGCACAATTATTGAGCCTATGACAGAAGAAGT
GTTAGTTCAGAGTAACACAAAGCATAAAAGAAAAAAAGGGAAATTTATTAAAAGGAAAAA
ATAAAATTTTGAAATCAAATTTTATTGAAATAAAAAAGAAAAAAAAATACT
>g2752.t4 Gene=g2752 Length=234
MEGKETDEREVLPPSKKVLNEIKTIKSQKKAFMRGTTDEIDPNAFLVVKSKHLITALPKN
QEFDEIDEEEELENLQSANKMSLAEAFENDDIIDDFVAELEEEEKAQQKDDNSVLPGWGS
WGGEGVKNVEKSKKTVPIVKKKDRVIINTKVNDKLKKHLISALPFPFTTIKDFQASMRYP
IGKDFVPAAAHSKLTESSFVTKAGTIIEPMTEEVLVQSNTKHKRKKGKFIKRKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g2752.t4 | PANTHER | PTHR14150 | U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 14 | 16 | 225 | 0 |
| 3 | g2752.t4 | PANTHER | PTHR14150:SF12 | U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 14 HOMOLOG A-RELATED | 16 | 225 | 0 |
| 1 | g2752.t4 | Pfam | PF04615 | Utp14 protein | 26 | 212 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0032040 | small-subunit processome | CC |
| GO:0006364 | rRNA processing | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
