General information for g2764.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2764 is located on chr_3: 20070377..20072084 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2764 | g2764.t2 | isoform | g2764.t2 | 20070313 | 20072084 |
| chr_3 | g2764 | g2764.t2 | exon | g2764.t2.exon1 | 20070313 | 20070321 |
| chr_3 | g2764 | g2764.t2 | exon | g2764.t2.exon2 | 20070377 | 20071185 |
| chr_3 | g2764 | g2764.t2 | exon | g2764.t2.exon3 | 20071263 | 20072084 |
| chr_3 | g2764 | g2764.t2 | cds | g2764.t2.CDS1 | 20071287 | 20072084 |
| chr_3 | g2764 | g2764.t2 | TTS | g2764.t2 | 20072145 | 20072145 |
| chr_3 | g2764 | g2764.t2 | TSS | g2764.t2 | NA | NA |
Sequences
>g2764.t2 Gene=g2764 Length=1640
ATGTCAGAAGATTGGTTTAAACCAGCTTTCATTGAAAATGATATCAAGCAGTGTTTGTCG
GCTAAAACGGAAAAAGAGATTAAATCAAAGGCGCGAAAAAAAAATTCAGAAACAAATGAA
GAGAGTTTAATAAGAAAGAGTAAATCATTAGAGCAAACAAGTAATGCAGTGGACAAAAAA
AGAAGATCAGGTAATGATATAGAAAATGAGGATCAAAATAAAAATAAACAAAAGGTGCCA
AAAAAGAGAAAGAAAGAAATTGTTGCACAATCGCAGCCGACTATTGAGATAAGTGAAGTG
AAATGGTTAGATATTTTTACGCCTAAAACAATTAATGAGCTTCTCGTTCATCCAAAGAAA
ATAGAAGAAATAAAACACTGGTTTCAACTCAATAGAAAGCATCCTGATGATCATCACATT
CTTTTATTAAGCGGACCAGCTGGTTGTGGCAAGCAAACTTGCACTAAAATGATTGCAAGT
GAAGAAGGATTCAATATTTGTGAATTTGAATCGAGATTGGATATTAGTGATGATCTTGTA
AAAAATGATTATAATGTTCCATATGAAAATCAAAAAGAAAAATTTGAAAATTTTCTTCTC
ACATCAACCCGCTTTCAATCACTCTTTACAACCAAAAGTCGATTATTGATTGTCAAAGAT
TTTCCCAATGTTTTTTTAATAAAAGAAGGAAATGAAGAATTTTGGTCTAGTTTGAGAAAA
TTCAAGAAATATTCTAATGCGCCAGTAGTCTTCATTATAACCGAATCAAAAACTAAAACT
TTGGACCTTGAATACTTTCTTTTTCCAGAAAATATTCGGAACTCGGAATTTCTAAAATAA
GTATGAATCCAATTACAACAACAATGCTTAAAAAAGCAATGAAGCAGATATGTACTACCT
TGAGTAATAACGAACATTTTAAAATACCGACTCAAGAAACTATCGACAATATTGCATTGC
AATCACTAGGAGATATTCAGGCAGCTATTTATAATTTGCAACTAGCTTGTCAACAAGGAC
CACAAAGTCTTAAATCAAAAAAATCTGACAAAAAACAAAATGTACCCGTAAAGAAGGCAA
AGAAGGAAATCGGTCGTGATGAACAAATTGATATCTTTCATGGTCTAGGAAAAGTTATGT
ATCCTAAATTAGAAATGGATTCAATGACTGAGCGAATGAAGTTAACAAATAATCCTGAGA
ATGTTGCGGAATTATTTTATGATCGTTTTAAAACTTTTACTGAATTGCTCTACTCGAATT
TTTTAAAGAATTTCACAGAAATAAAAGGAGCTGCAGCCGTCTCTGATACTTTATCAATGT
CAAATATTTTTCAAACTGAGTATAGACAAGCAGAAAATTTGCATAAAATAAGTCTCTGTA
TGGCTATTCGAAGTGCAATGGTTCATAATTCAGAAGGAGCACCAAGTGGATTTCGACCAG
TGAAAGGTTTTGCTAGTAAAAAATTCAAGAATATGGGAATGAATAACTTAGAAGAGTATA
AAAAACAACGTATTGGATTAAATGGTGGTCATCGTGTTACAAAAAAGGACTTTTTTGCAG
ATTATAAAATGTTTTCATCGATTATAAAACCAGAAGAAGAAGAGTCTGATGAAAATGAAA
AAATTAAGTCGAAACTGTAA
>g2764.t2 Gene=g2764 Length=265
MNPITTTMLKKAMKQICTTLSNNEHFKIPTQETIDNIALQSLGDIQAAIYNLQLACQQGP
QSLKSKKSDKKQNVPVKKAKKEIGRDEQIDIFHGLGKVMYPKLEMDSMTERMKLTNNPEN
VAELFYDRFKTFTELLYSNFLKNFTEIKGAAAVSDTLSMSNIFQTEYRQAENLHKISLCM
AIRSAMVHNSEGAPSGFRPVKGFASKKFKNMGMNNLEEYKKQRIGLNGGHRVTKKDFFAD
YKMFSSIIKPEEEESDENEKIKSKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g2764.t2 | Gene3D | G3DSA:1.10.8.60 | - | 5 | 85 | 4.3E-5 |
| 4 | g2764.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 81 | - |
| 3 | g2764.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 81 | - |
| 1 | g2764.t2 | PANTHER | PTHR12172 | CELL CYCLE CHECKPOINT PROTEIN RAD17 | 2 | 228 | 1.7E-33 |
| 2 | g2764.t2 | PANTHER | PTHR12172:SF0 | CELL CYCLE CHECKPOINT PROTEIN RAD17 | 2 | 228 | 1.7E-33 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006281 | DNA repair | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
