Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2764 g2764.t4 TSS g2764.t4 20070376 20070376
chr_3 g2764 g2764.t4 isoform g2764.t4 20070377 20071183
chr_3 g2764 g2764.t4 exon g2764.t4.exon1 20070377 20071183
chr_3 g2764 g2764.t4 cds g2764.t4.CDS1 20070836 20071183
chr_3 g2764 g2764.t4 TTS g2764.t4 20071140 20071140

Sequences

>g2764.t4 Gene=g2764 Length=807
GATTGGTTTAAACCAGCTTTCATTGAAAATGATATCAAGCAGTGTTTGTCGGCTAAAACG
GAAAAAGAGATTAAATCAAAGGCGCGAAAAAAAAATTCAGAAACAAATGAAGAGAGTTTA
ATAAGAAAGAGTAAATCATTAGAGCAAACAAGTAATGCAGTGGACAAAAAAAGAAGATCA
GGTAATGATATAGAAAATGAGGATCAAAATAAAAATAAACAAAAGGTGCCAAAAAAGAGA
AAGAAAGAAATTGTTGCACAATCGCAGCCGACTATTGAGATAAGTGAAGTGAAATGGTTA
GATATTTTTACGCCTAAAACAATTAATGAGCTTCTCGTTCATCCAAAGAAAATAGAAGAA
ATAAAACACTGGTTTCAACTCAATAGAAAGCATCCTGATGATCATCACATTCTTTTATTA
AGCGGACCAGCTGGTTGTGGCAAGCAAACTTGCACTAAAATGATTGCAAGTGAAGAAGGA
TTCAATATTTGTGAATTTGAATCGAGATTGGATATTAGTGATGATCTTGTAAAAAATGAT
TATAATGTTCCATATGAAAATCAAAAAGAAAAATTTGAAAATTTTCTTCTCACATCAACC
CGCTTTCAATCACTCTTTACAACCAAAAGTCGATTATTGATTGTCAAAGATTTTCCCAAT
GTTTTTTTAATAAAAGAAGGAAATGAAGAATTTTGGTCTAGTTTGAGAAAATTCAAGAAA
TATTCTAATGCGCCAGTAGTCTTCATTATAACCGAATCAAAAACTAAAACTTTGGACCTT
GAATACTTTCTTTTTCCAGAAAATATT

>g2764.t4 Gene=g2764 Length=116
MIASEEGFNICEFESRLDISDDLVKNDYNVPYENQKEKFENFLLTSTRFQSLFTTKSRLL
IVKDFPNVFLIKEGNEEFWSSLRKFKKYSNAPVVFIITESKTKTLDLEYFLFPENI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g2764.t4 Pfam PF03215 Rad17 P-loop domain 30 101 5.3e-06

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed