Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Acetylcholinesterase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2770 g2770.t2 TSS g2770.t2 20091419 20091419
chr_3 g2770 g2770.t2 isoform g2770.t2 20091461 20092631
chr_3 g2770 g2770.t2 exon g2770.t2.exon1 20091461 20091661
chr_3 g2770 g2770.t2 cds g2770.t2.CDS1 20091461 20091661
chr_3 g2770 g2770.t2 exon g2770.t2.exon2 20092129 20092631
chr_3 g2770 g2770.t2 cds g2770.t2.CDS2 20092129 20092629
chr_3 g2770 g2770.t2 TTS g2770.t2 NA NA

Sequences

>g2770.t2 Gene=g2770 Length=704
ATGGTTAAGTTGTTTTTATTATTAACATTATGTGGTTTCATTATATTGACTTACGGTCGT
ACATCTGAAAATCTTAAAGTGCAGTTACCTGATGGAAGTAGAATAATAGGAAGATATTTG
ACATCAGACAGTGGAAAAGGTATAAGAGCATTTTTAGGTGTTCCTTATGCAGAACCACCG
CTTGGAGATTTAAGATTCAAGGCTCCACAAAAGAAAAAACCATGGAATTTTGAACTCAAA
GCACATAATGATCCACCAATTTGTATTCAACGTGATCCATTTAGAAGAGATTATGAAATT
AGTGGAAGTGATGACTGTCTTTATATTAATATCTACACGCCAGAAAAAATTGAGAAACTA
CTGCCTGTAATGGTATTTTTCCACGGTGGTGGATTTATGTGTGGAAGTGGAATTAAACCA
TTCTATGGTCCTGATTATTTATTAGAACATGATGTGATTTATATTGGTGCAAATTACCGA
GTTGGGCCTCTTGGATTTCTTTCAACTGGTGATGATAATAGTCCTGGTAATTTTGGTTTA
AAAGATCAGGTATTTATATTAAAATGGATTAATGAAAATATTGAAGTTTTTGGTGGAGAT
AAGAATTTAGTGACAATATTTGGTGAATCTGCAGGAGGTGCTAGCGTCACATACCACATG
CATTCTCACCTATCTAAAGGTTTATTTCATCGAGGAATTGCTCA

>g2770.t2 Gene=g2770 Length=234
MVKLFLLLTLCGFIILTYGRTSENLKVQLPDGSRIIGRYLTSDSGKGIRAFLGVPYAEPP
LGDLRFKAPQKKKPWNFELKAHNDPPICIQRDPFRRDYEISGSDDCLYINIYTPEKIEKL
LPVMVFFHGGGFMCGSGIKPFYGPDYLLEHDVIYIGANYRVGPLGFLSTGDDNSPGNFGL
KDQVFILKWINENIEVFGGDKNLVTIFGESAGGASVTYHMHSHLSKGLFHRGIA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g2770.t2 Gene3D G3DSA:3.40.50.1820 - 9 234 1.4E-89
2 g2770.t2 PANTHER PTHR11559:SF395 CARBOXYLIC ESTER HYDROLASE 6 234 2.2E-103
3 g2770.t2 PANTHER PTHR11559 CARBOXYLESTERASE 6 234 2.2E-103
1 g2770.t2 Pfam PF00135 Carboxylesterase family 27 233 1.8E-82
10 g2770.t2 Phobius SIGNAL_PEPTIDE Signal peptide region 1 19 -
11 g2770.t2 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 3 -
12 g2770.t2 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 4 15 -
13 g2770.t2 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 16 19 -
9 g2770.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 20 234 -
5 g2770.t2 ProSitePatterns PS00941 Carboxylesterases type-B signature 2. 104 114 -
6 g2770.t2 ProSitePatterns PS00122 Carboxylesterases type-B serine active site. 197 212 -
4 g2770.t2 SUPERFAMILY SSF53474 alpha/beta-Hydrolases 27 234 6.25E-76
7 g2770.t2 SignalP_EUK SignalP-noTM SignalP-noTM 1 19 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed