General information for g2770.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Venom carboxylesterase-6.
Parent gene
- The parent gene g2770 is located on chr_3: 20091461..20093885 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2770 | g2770.t3 | TSS | g2770.t3 | 20091419 | 20091419 |
| chr_3 | g2770 | g2770.t3 | isoform | g2770.t3 | 20091461 | 20092979 |
| chr_3 | g2770 | g2770.t3 | exon | g2770.t3.exon1 | 20091461 | 20091661 |
| chr_3 | g2770 | g2770.t3 | exon | g2770.t3.exon2 | 20092212 | 20092979 |
| chr_3 | g2770 | g2770.t3 | cds | g2770.t3.CDS1 | 20092297 | 20092977 |
| chr_3 | g2770 | g2770.t3 | TTS | g2770.t3 | 20093958 | 20093958 |
Sequences
>g2770.t3 Gene=g2770 Length=969
ATGGTTAAGTTGTTTTTATTATTAACATTATGTGGTTTCATTATATTGACTTACGGTCGT
ACATCTGAAAATCTTAAAGTGCAGTTACCTGATGGAAGTAGAATAATAGGAAGATATTTG
ACATCAGACAGTGGAAAAGGTATAAGAGCATTTTTAGGTGTTCCTTATGCAGAACCACCG
CTTGGAGATTTAAGATTCAAGAAGAGATTATGAAATTAGTGGAAGTGATGACTGTCTTTA
TATTAATATCTACACGCCAGAAAAAATTGAGAAACTACTGCCTGTAATGGTATTTTTCCA
CGGTGGTGGATTTATGTGTGGAAGTGGAATTAAACCATTCTATGGTCCTGATTATTTATT
AGAACATGATGTGATTTATATTGGTGCAAATTACCGAGTTGGGCCTCTTGGATTTCTTTC
AACTGGTGATGATAATAGTCCTGGTAATTTTGGTTTAAAAGATCAGGTATTTATATTAAA
ATGGATTAATGAAAATATTGAAGTTTTTGGTGGAGATAAGAATTTAGTGACAATATTTGG
TGAATCTGCAGGAGGTGCTAGCGTCACATACCACATGCATTCTCACCTATCTAAAGGTTT
ATTTCATCGAGGAATTGCTCAATCGGGAACAAATTTAGCTCCTTGGGGAGCTGTTGCTCA
TCGTAATGTTGCTCAAGAAAGAGCAAAAATAATGGGTGAAAAAATGAATTGCCCAACTCA
TGATAATAGCGAAATGATGGCTTGTCTTAGAAAAGCATCGCCTCAGAAAATTACTGAAGC
ATTTTATGATTACTTTAAATGGGATACTGATCCTATGGTTCCATTTCCACCTGTCATTGA
ACATGAGCATGAAGGTGCATTCTTAACTGAGAATCCTCGTTTTAAATTTGATATGCATGG
AAATGATGTTCCTTTAATGACTGGAGTTACTAGTGAAGAGGGAGTTTTAAAAACAGGTGC
TTTAATTTA
>g2770.t3 Gene=g2770 Length=227
MVFFHGGGFMCGSGIKPFYGPDYLLEHDVIYIGANYRVGPLGFLSTGDDNSPGNFGLKDQ
VFILKWINENIEVFGGDKNLVTIFGESAGGASVTYHMHSHLSKGLFHRGIAQSGTNLAPW
GAVAHRNVAQERAKIMGEKMNCPTHDNSEMMACLRKASPQKITEAFYDYFKWDTDPMVPF
PPVIEHEHEGAFLTENPRFKFDMHGNDVPLMTGVTSEEGVLKTGALI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g2770.t3 | Gene3D | G3DSA:3.40.50.1820 | - | 1 | 226 | 1.6E-80 |
| 2 | g2770.t3 | PANTHER | PTHR11559:SF395 | CARBOXYLIC ESTER HYDROLASE | 1 | 227 | 5.0E-99 |
| 3 | g2770.t3 | PANTHER | PTHR11559 | CARBOXYLESTERASE | 1 | 227 | 5.0E-99 |
| 1 | g2770.t3 | Pfam | PF00135 | Carboxylesterase family | 1 | 221 | 9.8E-72 |
| 5 | g2770.t3 | ProSitePatterns | PS00122 | Carboxylesterases type-B serine active site. | 74 | 89 | - |
| 4 | g2770.t3 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 1 | 222 | 3.29E-66 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed