General information for g2774.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2774 is located on chr_3: 20151011..20151666 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2774 | g2774.t3 | isoform | g2774.t3 | 20150676 | 20151666 |
| chr_3 | g2774 | g2774.t3 | exon | g2774.t3.exon1 | 20150676 | 20150934 |
| chr_3 | g2774 | g2774.t3 | cds | g2774.t3.CDS1 | 20150685 | 20150934 |
| chr_3 | g2774 | g2774.t3 | exon | g2774.t3.exon2 | 20150996 | 20151666 |
| chr_3 | g2774 | g2774.t3 | cds | g2774.t3.CDS2 | 20150996 | 20151120 |
| chr_3 | g2774 | g2774.t3 | TTS | g2774.t3 | 20151667 | 20151667 |
| chr_3 | g2774 | g2774.t3 | TSS | g2774.t3 | NA | NA |
Sequences
>g2774.t3 Gene=g2774 Length=930
GTTCTTGGAATGGACAGATTAGGAAGAAAATTCTTTTTAGTGACTGGCACAGTTTCAGCT
GGTATTTGCTCGATGTTGATGTATTTTGTATCGAATAAAGTTGAAAATTTGATTGTCAGT
GCAACATTTAGTGCAGTGATATCATGTGCTAATGCTGCTCTTGATTGCCTCATCACAGAA
GTTTTTCCAACGAATTTAAGAGCTACTGGTGTTGCCATATCAATGGTTGCTGCTAGATTA
GGTGGCATTATTGGAAATGTTGTGATTGCAACACTTTTGGATACATATTGTCCAGCACCA
ACATTTATTGTGGCAGCATTACTCGCTGGAGGTGGTTTAATGTGTCTGTTTCTACCCAAT
ACAACAAGAAAAGCACTTTCTTGATAGCAGTAAAATTTATAAAATTTTCATCATTAGCAA
ATTTAAGGAAATTTATTCTGAAACTTTTAATTTTATTATTAAAAGTTTCGTGTTGTGAAT
TTATCAAAAAACAAGCATATTATTGAAATAGTTATTAAGAAAATGATTTTTAATGATAAT
TAAGACTTATTATTGTCTTAGTTTTAAGTATTAATACAAAAAAAACTCAGCTTAGTATCA
GAATTAGTAAATGATAAAGTGCCTTGAAATATTAAATAATTTTAAACATATTTAAAGTTG
TGGCATGATTTTTCATGTTATAAAAGTTAGATATTGTTTTTAAAAAAAATTTCGAGTCTC
AACAATTAATTTTTGAGCATAAATTAGTTGATGACATAAAAATACCTTCAAATTAGTTAA
GATGTCAAAAGTCATCAACTTTTCTATGTTCCATCAAAAAAAACTTTATTTTCTATAAAC
AAATCTGTAACATATGATAAAAACCAATTCTTTTACATATTTAACATTGTTTTAATGATG
AAGTTTATGAATAAATGATAAAATTGAAAA
>g2774.t3 Gene=g2774 Length=124
MDRLGRKFFLVTGTVSAGICSMLMYFVSNKVENLIVSATFSAVISCANAALDCLITEVFP
TNLRATGVAISMVAARLGGIIGNVVIATLLDTYCPAPTFIVAALLAGGGLMCLFLPNTTR
KALS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g2774.t3 | Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 1 | 124 | 1.4E-21 |
| 2 | g2774.t3 | PANTHER | PTHR24064 | SOLUTE CARRIER FAMILY 22 MEMBER | 1 | 124 | 3.4E-54 |
| 3 | g2774.t3 | PANTHER | PTHR24064:SF544 | LP17136P | 1 | 124 | 3.4E-54 |
| 1 | g2774.t3 | Pfam | PF07690 | Major Facilitator Superfamily | 1 | 119 | 8.6E-12 |
| 12 | g2774.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 6 | - |
| 18 | g2774.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 28 | - |
| 15 | g2774.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 29 | 33 | - |
| 19 | g2774.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 34 | 55 | - |
| 11 | g2774.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 56 | 66 | - |
| 17 | g2774.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 67 | 90 | - |
| 14 | g2774.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 91 | 95 | - |
| 16 | g2774.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 96 | 115 | - |
| 13 | g2774.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 116 | 124 | - |
| 10 | g2774.t3 | ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 1 | 120 | 15.823 |
| 8 | g2774.t3 | SUPERFAMILY | SSF103473 | MFS general substrate transporter | 1 | 120 | 2.49E-17 |
| 5 | g2774.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 29 | - |
| 7 | g2774.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 34 | 56 | - |
| 6 | g2774.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 68 | 90 | - |
| 4 | g2774.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 95 | 117 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0022857 | transmembrane transporter activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed