General information for g2780.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2780 is located on chr_3: 20226015..20226517 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2780 | g2780.t2 | isoform | g2780.t2 | 20213445 | 20221127 |
| chr_3 | g2780 | g2780.t2 | exon | g2780.t2.exon1 | 20213445 | 20214066 |
| chr_3 | g2780 | g2780.t2 | exon | g2780.t2.exon2 | 20215952 | 20216141 |
| chr_3 | g2780 | g2780.t2 | exon | g2780.t2.exon3 | 20219935 | 20220388 |
| chr_3 | g2780 | g2780.t2 | cds | g2780.t2.CDS1 | 20220236 | 20220388 |
| chr_3 | g2780 | g2780.t2 | exon | g2780.t2.exon4 | 20220746 | 20221127 |
| chr_3 | g2780 | g2780.t2 | cds | g2780.t2.CDS2 | 20220746 | 20221084 |
| chr_3 | g2780 | g2780.t2 | TSS | g2780.t2 | NA | NA |
| chr_3 | g2780 | g2780.t2 | TTS | g2780.t2 | NA | NA |
Sequences
>g2780.t2 Gene=g2780 Length=1648
TTTGTGATCTTCGAGTCAAAATATACACAATTCTTTCTATTGTGTACTCCCTTAAATAAG
GTACACATACATTTTCTAAGTTTTAAAATACATTTCTTGATTTAACTTATAAGTTAAAAA
CAATTTAAATTAGTGAATTTCAATTTTTTTTAAGAGAAAAGAATTTGTGAAATGATTCGA
TTTTTATCTAAAAAGTTCTTGAAAATTCCACATCATATTCTTGTAACAGTCAGAAAACAT
TTGAAATTTCAAATTTTCTTCATAGCAGCGACTCCCCAGTTAAATTTCGATACATCAACA
ATAAAAACTGTGAATTTCTCTACTCTCTCTAAAATAATTTTATTAGTGCATATTAATACT
TACAAGTTTAACTTAAGAAGAATCTTTTATATCTGTATGTTATTTGACTCAAAAAAACTA
TCGTGCGTGTCAAAATTTTTGTTTATTCTAAATTTAATTCATAAAAACCTGTTTGCCCAA
AAAAAAATCTCAAGAAAAAAATCTAATTTCTAAAAGACATTAGACAACAGAAAATCTAAA
TTAAGACCTAATTAAGTGGTATTTCAAGAAAATTATAAGAAATAAGTGTTTAATCGAATC
AAATGAGTACCAGTAATAAAAAGAACAACTCAAATTGAATGATGTTAGAAAATTAGCATT
AAAACTTTTTTACGTAATCTTGGATACAATAAATATACATTACTTATTAAACATATTATT
TGAGATCTCCTACAGTTGGATAATAGAGCAAAAGGAAATATATAATATATTACCAAAGTA
GATTAAAGATTATCTAAAGACAGATTAAAAATAGGACAAAGTGGAAGTCCATCTGCATCA
TCAAGTTCATCAAAACAAAATCAGCAAATATCGCCTGCACATTCTAATTCTATTGGTCTT
AAGACATCAGCTTCTGCATCAAGTCTTGATCGAGTTGAATTTAATAACACTGGTAGTGCT
TCGAATGAACTTGGTGCAACAAGGAAATTATCAAAGGGTCAAAAACAATCTTCAAAAGAT
AAATTGAATGATTTACTGCGAGTCGCATCCAAGGAAAAGTTGATTGATGAAAAGAAAGAG
TTGAAGAAGCAACAGAAATTACAGCAAAAACAAATGCAGCAAGTTGCTCAACAGTCGACA
AATGTCCACCATATACCATCATCATCGTCTGTAGCTACAGCAACTGGACATTTGCCAAAC
AATCAACTCTCAGGTCGTTCAAACTCTAAAGATTTTGATGTCGTTACATATGATGAAGTT
CAAGACATAAGACATAAGAAAACTATGCAAGAACTCCTTCAATTGCAACAGGAAAATGCA
AGTTTGGAAATCAAGATTAAAGAACTAACGACATCACATAACGAATTATTGCTGCTGCGC
AAAGACATTCAGAAACTTCAACAGACAAACGAAATGAATAATTCAAAGCTTAATCAACTA
GAGGAGGAGAACGAGTCATTACGAATGCGTTTGAGAAATGTTGTACAATCACCAATATCT
GACTCTGAGAAACAGCAGATGATTGACGACGGAAGACAGAAACACAGTTCTTCTGCTCCT
GCATCTATTTCAATGACTCTTCCTAATGTAGGTGTTTTTTACTAAAATAAATAAATTTGC
TAAAAACAATAAAATTTTTATTTATAGC
>g2780.t2 Gene=g2780 Length=163
MQQVAQQSTNVHHIPSSSSVATATGHLPNNQLSGRSNSKDFDVVTYDEVQDIRHKKTMQE
LLQLQQENASLEIKIKELTTSHNELLLLRKDIQKLQQTNEMNNSKLNQLEEENESLRMRL
RNVVQSPISDSEKQQMIDDGRQKHSSSAPASISMTLPNVGVFY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g2780.t2 | Coils | Coil | Coil | 54 | 81 | - |
| 3 | g2780.t2 | Coils | Coil | Coil | 92 | 126 | - |
| 2 | g2780.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - |
| 1 | g2780.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 150 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
