Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2780 g2780.t3 isoform g2780.t3 20222586 20224261
chr_3 g2780 g2780.t3 exon g2780.t3.exon1 20222586 20223839
chr_3 g2780 g2780.t3 cds g2780.t3.CDS1 20222636 20223839
chr_3 g2780 g2780.t3 exon g2780.t3.exon2 20224193 20224261
chr_3 g2780 g2780.t3 cds g2780.t3.CDS2 20224193 20224260
chr_3 g2780 g2780.t3 TSS g2780.t3 NA NA
chr_3 g2780 g2780.t3 TTS g2780.t3 NA NA

Sequences

>g2780.t3 Gene=g2780 Length=1323
CAAATATTGTTGAGTTGCATCCTAAAATAAATCCAATACAAGAGACTACAATGCAAGAAA
AAGATGGTGACGTAGGAGCAGATGAGTTTCTATTAGAGTTGACAAGAATGAGAAATTCTT
TAAATGCATTAACATTAAAGAATTTTATGTTTGATAAAAATAATGGTGAAGAAGAAATTA
TAAGCATGGAGGTAAAAGAAGTTCCTACATCAGAAGATGTAATTGATTCAACTTCTTCGA
CATCATTATTGAAGCAAAAACCACCCGTTAGTTTCAGAAGAAATTTGTCATCTAAACATC
GTCAAGATAGTAATAGGACACAAAGTGGCCTAATTAGTCAAGATGATGTTTTAAAAGCAT
TAAACGAGAATCAAGAGAAACTCAATGAGCAAACCAAATTAAAATCCAAAGTTCATTTTG
CTGTAGAAGAACAGGAAGATGAAAAAGTAAAAAAACAACTGAAATTATTAAAAGATTCTT
CGCGCGAGTCAGATGAAGTGGCAATAATAAATGAATTACCATGGCAAAAGAAGAGTTATC
GAGAACATAAAACTGTTACTCCATACTTTAAACAAAGTAATAAACATGATAATCAAATTA
AAGCGTTGAGTAATGAAAATATGAAACAAATGCCAAAGGAAATAACTTTCCGGCCAATAG
AAAGCAGTAAGAGTACTGAAGATATTGATAAGCAACTAAAGCAAATTGTTAGACCTGTTC
CATTATTTGCGTCGAAAAGTTATCAAGAATTATCGACCACCAATGAAGGTTTTAAGCCAC
TCGATGAATTTATTACTAAATCAAGCGATAATCTTTTGTTGGATAATATCGATGGAACAC
GTCGTATGAAAGAAAGTAAAACACATAAATTGTTGCGAATTCGAAGTGCGAGTAATAATA
GTCTCGATCGATCGAATGAACAGATTATTTATGAGAACTTTGACTATGAAGTTCCACTTT
CCAATGATTTTGTTACAATGAGAAAAAAACAAAAGCCACCTTTACCACAACCAAGATTAA
GTGGCGAGATAAATAACAACAGTCATAAGAATAAGGCTAACGAAGATGATAATAATTCTA
AACGTAAATCCAAAACAATTGTTTATGTTTTGGATAAAGAAAAAGATGAATTTGTGCTAG
AAAATCCTGAAATAGTTGATGATGAAGCATATGAGAACATATTGTTTGAAAACAGCATCG
ATAAATATAGTGAATTCGATTTGTTTAACACACTTCTAAACTCGCGTGATGATTTGGTAA
CATCTTCTAACGAATCACAACAATCAATATTGACGACAGTGCAGCAAGAAATGGCTCAAC
GAA

>g2780.t3 Gene=g2780 Length=424
MQEKDGDVGADEFLLELTRMRNSLNALTLKNFMFDKNNGEEEIISMEVKEVPTSEDVIDS
TSSTSLLKQKPPVSFRRNLSSKHRQDSNRTQSGLISQDDVLKALNENQEKLNEQTKLKSK
VHFAVEEQEDEKVKKQLKLLKDSSRESDEVAIINELPWQKKSYREHKTVTPYFKQSNKHD
NQIKALSNENMKQMPKEITFRPIESSKSTEDIDKQLKQIVRPVPLFASKSYQELSTTNEG
FKPLDEFITKSSDNLLLDNIDGTRRMKESKTHKLLRIRSASNNSLDRSNEQIIYENFDYE
VPLSNDFVTMRKKQKPPLPQPRLSGEINNNSHKNKANEDDNNSKRKSKTIVYVLDKEKDE
FVLENPEIVDDEAYENILFENSIDKYSEFDLFNTLLNSRDDLVTSSNESQQSILTTVQQE
MAQR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g2780.t3 Coils Coil Coil 94 114 -
1 g2780.t3 MobiDBLite mobidb-lite consensus disorder prediction 52 94 -
3 g2780.t3 MobiDBLite mobidb-lite consensus disorder prediction 55 78 -
2 g2780.t3 MobiDBLite mobidb-lite consensus disorder prediction 311 344 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed