General information for g2782.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2782 is located on chr_3: 20266523..20273503 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2782 | g2782.t11 | isoform | g2782.t11 | 20266523 | 20268872 |
| chr_3 | g2782 | g2782.t11 | exon | g2782.t11.exon1 | 20266523 | 20266836 |
| chr_3 | g2782 | g2782.t11 | exon | g2782.t11.exon2 | 20266896 | 20268758 |
| chr_3 | g2782 | g2782.t11 | cds | g2782.t11.CDS1 | 20267793 | 20268098 |
| chr_3 | g2782 | g2782.t11 | exon | g2782.t11.exon3 | 20268811 | 20268872 |
| chr_3 | g2782 | g2782.t11 | TSS | g2782.t11 | NA | NA |
| chr_3 | g2782 | g2782.t11 | TTS | g2782.t11 | NA | NA |
Sequences
>g2782.t11 Gene=g2782 Length=2239
AAACTTCAAAGACTTGAAAGACTATATAATTTGCTGTAATTATTGTTTCTGGCTGTTAAT
TTATAATAAAACTTCAATAAATTATTTTTAATCACCAAAGATATCAGATTTTGCAAAGTG
CCTGTAAATTGAGAAATGTATAATGAAAAAAAATTGAAAACTTCTTGTACTTCATGTAAT
TCACATATAATAATAAAGTTTTATTACTCAAAGACAACTTACATATGCATTTTTCACTGA
AGTATTCTTAAAATTTTTATATTAGAAAATCATTTTGAAATCATAAGAGATTTTATTTTC
TAAATAGAATAGATGTACTTACTAATGATCGTTGGTTTTTCGAAGACAGATGAAGATATT
CATCAAAATCAACTAATGCATAACCTTGTTCAACCATGTAATCAGATATACGAATAAAAT
CAACCTGATTTATGATAATTGAAAGAGAAAATATTCCGTTTTGAATTTTTTTAATTGTAG
CCATCATACTTTCATTTCCCATCATGCTCATATTCCCATTTCTTATCAATTCTAATTCGA
TTTTGCTATTTTGACACCAAGTATTGTGTTTAGGCTTCAAACCATGTAATCGACCATACG
CAGACTTTGAAGATTCTTTAACAAACTCCTGTTCAAGATTGTATACATCTGTTGCCAATA
CTTTATATATTTGATTTTTTACTGTCAGATAATCGATAAATCGAATTCCAAGTTTTTCTA
AGTGAGCTTCCTTTATTTCAGCACGATACCAACGATTTCTATCGTTTGTATTACGAACTG
CAACTATCATTCCAATTTTTATATTTTTAACAGCATAATATTGAAGATTCTTAATACTAT
CGTATCGACGGTTCAATTTCTCCATTAAAACCTCTAATTTTTCTAGCGAAAATTGAAATG
TAAAACAATCTGGAGAATCAACATCAATGATCTTAATTTTGAAAAACGCCTTTTCTCCAT
GATTGTAATTTGGTGATTCAAATGAGAAATTCAACACAGGATGTGATATTTGAATATGAT
TTTCCGTCTTGATTTCATTAATAGCTTGTTTTAGCAATCGGAATGTAGACAAACGATTTT
TCAATTGAATAGGTGCTTCTCGTTTATATGATTGAGTCATATTTAAATTTTTTTGAGAAA
TATTGTCAGACGAGCCAACTAATGTTGTAGAAGATTCACTATTTTCCAAAACTGGCATCG
ATTTCACTGACATGTATTCTGTTGATGTGCTAATTGCATCTGAATCGTCAAAATCTGGAT
TTTTCTTATTACTAACTAAAGTCGCTATAGATGATGTTGTTGGCATTTCAGATACAGGTA
TTGTTGATAAAGATTCTGAATTACTTTGTTCCTTTGCTTCACGAGGAGGCGATTCTTCTG
CCTTATATATTTTAACAGTTTTAAAGACACGAAGAGGAGGAAGTGTTTTTAGCAGAGCTT
TTTTTGAAATTGTTGATCGCGATGATGTTTTAGCAGATTTGGTGTTAGTTTGCGTGTTAT
TTTTAATAGATGTTTGAGAAGATACTGGTGGAACAATCGGTCGAGAAGTTGAAGTTTTTG
ATAGTGCTGTCGATAACATTGGTTGAGATCTTATTGAATTTGTATTTTTTGATCGTGATG
TCGATGACATTGGTTGAGGTCTGGTTGAATTTGTACTGTAATTGTTTGAAATATTGTTTC
CAGTGAAATTTCTTTGTGAAAACACCAATTGTGGAGTTACATTGCTTTTTTGACACATTG
GCAGAACAATAGCTGGTGATATAGATGCATTGTTTCTGAATGGAAGTGCATTTACAGAAA
GTCTATTAGTTGGCATCAGTCGAGGAACAGTATAATTTACATTAGGTCTGAAGTTTTGAT
GTAATCTATAAACTGGCCTGAACACAGGTTTTCCAGCAACCACTATTGGAACATTATTAG
GACCAACTTTCAATTTAATACCTTTGTAGTTTTTGCTATATTTTTGTACAGTCATTTTAT
CCATAAAAGCTGAAGCAGCATTTCCAGAAACACGTGATAATATAACATTATTAGTTCCTT
GATCGTAATGCACTTTCACAACATCGGGCATTTGTTGGAAAAAAGTGTAAAAGCTCATTC
CATACTCTTTCAATTTGTCATTAAAATTATAACCTTCAGTTTCATACCAAGCACTTCTAA
ATTCACGCTCAGTCGCGCATTTTCCTAAACTTAACAGTAATGCACGAATACTGTGCTTAA
GGAAATCTAAATCTGCCAT
>g2782.t11 Gene=g2782 Length=101
MYSVDVLIASESSKSGFFLLLTKVAIDDVVGISDTGIVDKDSELLCSFASRGGDSSALYI
LTVLKTRRGGSVFSRAFFEIVDRDDVLADLVLVCVLFLIDV
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
