General information for g2782.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2782 is located on chr_3: 20266523..20273503 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2782 | g2782.t2 | TSS | g2782.t2 | 20263032 | 20263032 |
| chr_3 | g2782 | g2782.t2 | isoform | g2782.t2 | 20263126 | 20264452 |
| chr_3 | g2782 | g2782.t2 | exon | g2782.t2.exon1 | 20263126 | 20263162 |
| chr_3 | g2782 | g2782.t2 | cds | g2782.t2.CDS1 | 20263126 | 20263162 |
| chr_3 | g2782 | g2782.t2 | exon | g2782.t2.exon2 | 20263266 | 20263359 |
| chr_3 | g2782 | g2782.t2 | cds | g2782.t2.CDS2 | 20263266 | 20263359 |
| chr_3 | g2782 | g2782.t2 | exon | g2782.t2.exon3 | 20263789 | 20264452 |
| chr_3 | g2782 | g2782.t2 | cds | g2782.t2.CDS3 | 20263789 | 20264452 |
| chr_3 | g2782 | g2782.t2 | TTS | g2782.t2 | NA | NA |
Sequences
>g2782.t2 Gene=g2782 Length=795
ATGTGGAAGCTAAATTACTTTATTGTGTTATTATGTGTGGTATCATCATCATCATCATTA
GCAAATAATGTATCACAGAAATATGATGCCGAATGTTCGAAGGGAATTACTTTTTGGTGT
GAGCATTTAATGAATGCAAAAAAATGCAACGCAGTTGATTTCTGTATTAAAACTGTTTGG
GAAAATCATCTTGTGAAGATCGATTCAAATCCACTTTGTGATGACTGCAAAGATTGGGTG
AAGCAAGCTCGAGATTTGTTGGAACGAAAAGAAACTGCAAATGCAATTATAAGAACTTTA
GCGTGGTCATGTGCATTATGTCCAGATACCAATGGAAGGACAAAATGTAGACAAATTATT
TCTAATAATGTGATGGAAATTCTGAAACTTCTTGACTCACGAATGAATCCCGATGCAATT
TGTTCAGCAATTCATTTCTGCAATAATCGTGAATTTACAAAAATATTTGAAAAGGCATTT
GAGTTAGAATCTCAACAAAAATTGCAGCAAAAACCTAGACAAAAGTTGCTACCTTTTACT
TGTGGTCAGTGCAATCATATTGGATCAGTTCTAGGAGAAAAGCTCGCGAATGCAAATCAC
GATGATATGCTCGAGGGTGTGTTGAAAGTTTGCGGTCAAATGTCATCATTTTCTGATGCA
TGTTCAAACCTCGTATTCAAAAACTTCAATGATATCTACCAGCAACTCCCAAAACTAATA
ACGAAAGAGAAACTATGTCATTCATCATGTTCACAACATTATCAAAATCATGAAGGCATC
GTTGATATTTCACCA
>g2782.t2 Gene=g2782 Length=265
MWKLNYFIVLLCVVSSSSSLANNVSQKYDAECSKGITFWCEHLMNAKKCNAVDFCIKTVW
ENHLVKIDSNPLCDDCKDWVKQARDLLERKETANAIIRTLAWSCALCPDTNGRTKCRQII
SNNVMEILKLLDSRMNPDAICSAIHFCNNREFTKIFEKAFELESQQKLQQKPRQKLLPFT
CGQCNHIGSVLGEKLANANHDDMLEGVLKVCGQMSSFSDACSNLVFKNFNDIYQQLPKLI
TKEKLCHSSCSQHYQNHEGIVDISP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g2782.t2 | Gene3D | G3DSA:1.10.225.10 | Saposin | 67 | 149 | 3.6E-16 |
| 10 | g2782.t2 | Gene3D | G3DSA:1.10.225.10 | Saposin | 178 | 255 | 1.4E-7 |
| 3 | g2782.t2 | PANTHER | PTHR11480 | SAPOSIN-RELATED | 8 | 252 | 5.4E-25 |
| 4 | g2782.t2 | PANTHER | PTHR11480:SF84 | BCDNA.GH08312 | 8 | 252 | 5.4E-25 |
| 2 | g2782.t2 | Pfam | PF02199 | Saposin A-type domain | 31 | 61 | 7.2E-13 |
| 1 | g2782.t2 | Pfam | PF03489 | Saposin-like type B, region 2 | 115 | 147 | 1.3E-6 |
| 12 | g2782.t2 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 21 | - |
| 13 | g2782.t2 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 6 | - |
| 14 | g2782.t2 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 7 | 14 | - |
| 15 | g2782.t2 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 15 | 21 | - |
| 11 | g2782.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 22 | 265 | - |
| 20 | g2782.t2 | ProSiteProfiles | PS51110 | Saposin A-type domain profile. | 25 | 65 | 12.19 |
| 21 | g2782.t2 | ProSiteProfiles | PS50015 | Saposin B type domain profile. | 69 | 151 | 17.458 |
| 17 | g2782.t2 | SMART | SM00162 | sapA_2 | 28 | 61 | 4.9E-5 |
| 19 | g2782.t2 | SMART | SM00741 | sapb_4 | 71 | 147 | 8.8E-13 |
| 18 | g2782.t2 | SMART | SM00741 | sapb_4 | 179 | 250 | 0.015 |
| 5 | g2782.t2 | SUPERFAMILY | SSF47862 | Saposin | 70 | 149 | 3.7E-14 |
| 6 | g2782.t2 | SUPERFAMILY | SSF47862 | Saposin | 179 | 247 | 1.83E-8 |
| 8 | g2782.t2 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 21 | - |
| 16 | g2782.t2 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 21 | - |
| 7 | g2782.t2 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 30 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed