General information for g2782.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2782 is located on chr_3: 20266523..20273503 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2782 | g2782.t3 | TSS | g2782.t3 | 20263032 | 20263032 |
| chr_3 | g2782 | g2782.t3 | isoform | g2782.t3 | 20263126 | 20264452 |
| chr_3 | g2782 | g2782.t3 | exon | g2782.t3.exon1 | 20263126 | 20263159 |
| chr_3 | g2782 | g2782.t3 | cds | g2782.t3.CDS1 | 20263126 | 20263159 |
| chr_3 | g2782 | g2782.t3 | exon | g2782.t3.exon2 | 20263266 | 20263359 |
| chr_3 | g2782 | g2782.t3 | cds | g2782.t3.CDS2 | 20263266 | 20263359 |
| chr_3 | g2782 | g2782.t3 | exon | g2782.t3.exon3 | 20263789 | 20264452 |
| chr_3 | g2782 | g2782.t3 | cds | g2782.t3.CDS3 | 20263789 | 20264452 |
| chr_3 | g2782 | g2782.t3 | TTS | g2782.t3 | NA | NA |
Sequences
>g2782.t3 Gene=g2782 Length=792
ATGTGGAAGCTAAATTACTTTATTGTGTTATTATTGGTATCATCATCATCATCATTAGCA
AATAATGTATCACAGAAATATGATGCCGAATGTTCGAAGGGAATTACTTTTTGGTGTGAG
CATTTAATGAATGCAAAAAAATGCAACGCAGTTGATTTCTGTATTAAAACTGTTTGGGAA
AATCATCTTGTGAAGATCGATTCAAATCCACTTTGTGATGACTGCAAAGATTGGGTGAAG
CAAGCTCGAGATTTGTTGGAACGAAAAGAAACTGCAAATGCAATTATAAGAACTTTAGCG
TGGTCATGTGCATTATGTCCAGATACCAATGGAAGGACAAAATGTAGACAAATTATTTCT
AATAATGTGATGGAAATTCTGAAACTTCTTGACTCACGAATGAATCCCGATGCAATTTGT
TCAGCAATTCATTTCTGCAATAATCGTGAATTTACAAAAATATTTGAAAAGGCATTTGAG
TTAGAATCTCAACAAAAATTGCAGCAAAAACCTAGACAAAAGTTGCTACCTTTTACTTGT
GGTCAGTGCAATCATATTGGATCAGTTCTAGGAGAAAAGCTCGCGAATGCAAATCACGAT
GATATGCTCGAGGGTGTGTTGAAAGTTTGCGGTCAAATGTCATCATTTTCTGATGCATGT
TCAAACCTCGTATTCAAAAACTTCAATGATATCTACCAGCAACTCCCAAAACTAATAACG
AAAGAGAAACTATGTCATTCATCATGTTCACAACATTATCAAAATCATGAAGGCATCGTT
GATATTTCACCA
>g2782.t3 Gene=g2782 Length=264
MWKLNYFIVLLLVSSSSSLANNVSQKYDAECSKGITFWCEHLMNAKKCNAVDFCIKTVWE
NHLVKIDSNPLCDDCKDWVKQARDLLERKETANAIIRTLAWSCALCPDTNGRTKCRQIIS
NNVMEILKLLDSRMNPDAICSAIHFCNNREFTKIFEKAFELESQQKLQQKPRQKLLPFTC
GQCNHIGSVLGEKLANANHDDMLEGVLKVCGQMSSFSDACSNLVFKNFNDIYQQLPKLIT
KEKLCHSSCSQHYQNHEGIVDISP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g2782.t3 | Gene3D | G3DSA:1.10.225.10 | Saposin | 66 | 148 | 3.6E-16 |
| 9 | g2782.t3 | Gene3D | G3DSA:1.10.225.10 | Saposin | 177 | 254 | 1.4E-7 |
| 3 | g2782.t3 | PANTHER | PTHR11480 | SAPOSIN-RELATED | 9 | 251 | 3.4E-25 |
| 4 | g2782.t3 | PANTHER | PTHR11480:SF84 | BCDNA.GH08312 | 9 | 251 | 3.4E-25 |
| 2 | g2782.t3 | Pfam | PF02199 | Saposin A-type domain | 30 | 60 | 7.2E-13 |
| 1 | g2782.t3 | Pfam | PF03489 | Saposin-like type B, region 2 | 114 | 146 | 1.3E-6 |
| 12 | g2782.t3 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 20 | - |
| 13 | g2782.t3 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 6 | - |
| 14 | g2782.t3 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 7 | 15 | - |
| 15 | g2782.t3 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 20 | - |
| 11 | g2782.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 21 | 264 | - |
| 20 | g2782.t3 | ProSiteProfiles | PS51110 | Saposin A-type domain profile. | 24 | 64 | 12.19 |
| 21 | g2782.t3 | ProSiteProfiles | PS50015 | Saposin B type domain profile. | 68 | 150 | 17.458 |
| 17 | g2782.t3 | SMART | SM00162 | sapA_2 | 27 | 60 | 4.9E-5 |
| 18 | g2782.t3 | SMART | SM00741 | sapb_4 | 70 | 146 | 8.8E-13 |
| 19 | g2782.t3 | SMART | SM00741 | sapb_4 | 178 | 249 | 0.015 |
| 6 | g2782.t3 | SUPERFAMILY | SSF47862 | Saposin | 69 | 148 | 3.7E-14 |
| 5 | g2782.t3 | SUPERFAMILY | SSF47862 | Saposin | 178 | 246 | 1.83E-8 |
| 8 | g2782.t3 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 20 | - |
| 16 | g2782.t3 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 20 | - |
| 7 | g2782.t3 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 26 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
