Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Prosaposin.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2782 g2782.t4 TSS g2782.t4 20263032 20263032
chr_3 g2782 g2782.t4 isoform g2782.t4 20263126 20266523
chr_3 g2782 g2782.t4 exon g2782.t4.exon1 20263126 20263162
chr_3 g2782 g2782.t4 exon g2782.t4.exon2 20263266 20263363
chr_3 g2782 g2782.t4 exon g2782.t4.exon3 20263789 20265410
chr_3 g2782 g2782.t4 cds g2782.t4.CDS1 20264030 20265410
chr_3 g2782 g2782.t4 exon g2782.t4.exon4 20265464 20265576
chr_3 g2782 g2782.t4 cds g2782.t4.CDS2 20265464 20265576
chr_3 g2782 g2782.t4 exon g2782.t4.exon5 20265636 20266218
chr_3 g2782 g2782.t4 cds g2782.t4.CDS3 20265636 20266218
chr_3 g2782 g2782.t4 exon g2782.t4.exon6 20266291 20266523
chr_3 g2782 g2782.t4 cds g2782.t4.CDS4 20266291 20266523
chr_3 g2782 g2782.t4 TTS g2782.t4 20266737 20266737

Sequences

>g2782.t4 Gene=g2782 Length=2686
ATGTGGAAGCTAAATTACTTTATTGTGTTATTATGTGTGGTATCATCATCATCATCATTA
GCAAATAATGTATCACAGAAATATGATGCCGAATGTTCGAAGGGAATTACTTTTTGGTGT
GAGCATTTAATGTAAGAATGCAAAAAAATGCAACGCAGTTGATTTCTGTATTAAAACTGT
TTGGGAAAATCATCTTGTGAAGATCGATTCAAATCCACTTTGTGATGACTGCAAAGATTG
GGTGAAGCAAGCTCGAGATTTGTTGGAACGAAAAGAAACTGCAAATGCAATTATAAGAAC
TTTAGCGTGGTCATGTGCATTATGTCCAGATACCAATGGAAGGACAAAATGTAGACAAAT
TATTTCTAATAATGTGATGGAAATTCTGAAACTTCTTGACTCACGAATGAATCCCGATGC
AATTTGTTCAGCAATTCATTTCTGCAATAATCGTGAATTTACAAAAATATTTGAAAAGGC
ATTTGAGTTAGAATCTCAACAAAAATTGCAGCAAAAACCTAGACAAAAGTTGCTACCTTT
TACTTGTGGTCAGTGCAATCATATTGGATCAGTTCTAGGAGAAAAGCTCGCGAATGCAAA
TCACGATGATATGCTCGAGGGTGTGTTGAAAGTTTGCGGTCAAATGTCATCATTTTCTGA
TGCATGTTCAAACCTCGTATTCAAAAACTTCAATGATATCTACCAGCAACTCCCAAAACT
AATAACGAAAGAGAAACTATGTCATTCATCATGTTCACAACATTATCAAAATCATGAAGG
CATCGTTGATATTTCACCAGCATTTGACAATCCAAATATTCCATGTGAATTATGTGAACA
GCTCATGCTCCATCTTCGAGAAGTTTTAATAGCAAACACTACAGAAATTGAGTTTAAGAA
TATCCTTGAAGGTTTCTGCAATCAAATGCCTTCCATTGCACAAGAATGTGTTTCACTTGC
TGATCAATATTATGACTCAATTTATCAATATCTTGTGAATGGACTTGATGCAAATAAAAC
CTGTGTCATGATCGGAATATGCTCACATAAATTAGATTCGTATAATGCACCAGCAATGCC
ACTTTTATCAAGTGAATTCTTCCCAGTACCAGAAGTAGATTCAATCGAAGTTCATATTGT
AACACAGGATTCATCAATAAATCTTCATAAGGATGGAAGATTGTGTACTGCATGCGAATA
TACAATGAATTTAGTTCACATCGAAATGAATAAGAATGGAGTACAAGAAAACATTTTAAA
GAAAGTCAGAGCAGAATGTAAAAAGTTACCAGCTTATGTACGTCAATGTGAAGATCTTAT
TGATACGTTTGGTGATCAAATTATGAATGCAATTTATCAAGGCACAAATCCACGTTTAGT
TTGTCCACTCATAAAAATGTGTCCTCCCAATTTAAACTTTCAATACCTCCAAGAAACTGC
TGTAGATGAAAAACCAACATGTCCATTCTGTCTTTTCGCTATGCAAGAGGTTCGAGATTT
GGTATCGTCAAATGCATCCAAAACAAATGTTGAAAAAGTTTTAGATCAACTATGCACGCA
TCTATCAGACAAATTAAAATCACAATGTATTGAGTTTGTTAATGAATATTCATCAGAAGT
GGTAGACATGATTTTAGCAAACTTCACACCACAAGAGGCATGTGTCTTTATAAAATTGTG
TAGTCAAGAGAAACCGAAATTAAAACGTTTTAGTATGGCTGGAATTTTTAATGAAAATCA
TAGCGATGAAATGATAGATTTTGATGATGATGATAATAACAATTCAAAGTTACTTGATAA
TCCTCAATGTGATTTGTGTAAAGCTGTTATAAAATTGATTGAACAAAGAGTCATTGATAT
TAAATCAAAGGATGAAATTCGTCGTGAACTTGAAAATTCTTGTAGTCATTTAAAACGGTT
TTCAAAAGAGTGCAAAGCATTTGTCGACAAATATTCTGATCGAATTGTTGATTTAGTTAG
CAAGGAATTAGCACCCGAAAATGTATGCAAAGAACTGATATTTTGTGTAACTGAAGAGAA
GGTTGACATGCAAGATTATGATGTCGGTCTTGATATTTTCGCAAAAAGTTTCAGTGAATC
AGCAGAAGTCAGTGAAGACCTTGAAGTTACAGGAACGAGTTGTATCATTTGTGAATTTAT
TATGACTAAAATCGATGAAGAATTAAATGATAAGCAAAAGGATGAAGATATTAAACACAT
CATTAAAAACGTTTGCTCAAAAATGCCATCAACTGTTTCGAAGCAATGTAATCAATTTAT
CGACTATTACTTTGACATGATCATTGTACTCATCGAGACAACGAAACCATCAGAAATGTG
TAAAGAGTTGAAGCTTTGTCCAAAATCAAATGAAGAACTTGAAAATCAACTTGTGGAAAT
AAAAGGTGACATTTATACCTGTGCAGTTTGCAGAGGTGCTGTTGAGAGTTTAGATTCTAT
AATTGAAGATCCACAAGTTGATGTAAAATTGGAAAATCTTGAAGAAAAAATTTGTGAAAA
ATTTGCAGGAAAATTTAAAGAGAAGTGTCACAATTTAACAAATACTTATGGCACACTTAT
CATCAATTTATTGAAAAACATTGCTGAATCTGATCAAATTTGTTACAAACTTAATTTATG
TGCATCAGACGAGAAAAACAACACAGGAATGGCTCGTTTTTACTAA

>g2782.t4 Gene=g2782 Length=769
MEILKLLDSRMNPDAICSAIHFCNNREFTKIFEKAFELESQQKLQQKPRQKLLPFTCGQC
NHIGSVLGEKLANANHDDMLEGVLKVCGQMSSFSDACSNLVFKNFNDIYQQLPKLITKEK
LCHSSCSQHYQNHEGIVDISPAFDNPNIPCELCEQLMLHLREVLIANTTEIEFKNILEGF
CNQMPSIAQECVSLADQYYDSIYQYLVNGLDANKTCVMIGICSHKLDSYNAPAMPLLSSE
FFPVPEVDSIEVHIVTQDSSINLHKDGRLCTACEYTMNLVHIEMNKNGVQENILKKVRAE
CKKLPAYVRQCEDLIDTFGDQIMNAIYQGTNPRLVCPLIKMCPPNLNFQYLQETAVDEKP
TCPFCLFAMQEVRDLVSSNASKTNVEKVLDQLCTHLSDKLKSQCIEFVNEYSSEVVDMIL
ANFTPQEACVFIKLCSQEKPKLKRFSMAGIFNENHSDEMIDFDDDDNNNSKLLDNPQCDL
CKAVIKLIEQRVIDIKSKDEIRRELENSCSHLKRFSKECKAFVDKYSDRIVDLVSKELAP
ENVCKELIFCVTEEKVDMQDYDVGLDIFAKSFSESAEVSEDLEVTGTSCIICEFIMTKID
EELNDKQKDEDIKHIIKNVCSKMPSTVSKQCNQFIDYYFDMIIVLIETTKPSEMCKELKL
CPKSNEELENQLVEIKGDIYTCAVCRGAVESLDSIIEDPQVDVKLENLEEKICEKFAGKF
KEKCHNLTNTYGTLIINLLKNIAESDQICYKLNLCASDEKNNTGMARFY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
43 g2782.t4 Gene3D G3DSA:1.10.225.10 Saposin 55 127 0.0000010
45 g2782.t4 Gene3D G3DSA:1.10.225.10 Saposin 145 224 0.0000000
47 g2782.t4 Gene3D G3DSA:1.10.225.10 Saposin 266 348 0.0000000
44 g2782.t4 Gene3D G3DSA:1.10.225.10 Saposin 356 437 0.0000000
42 g2782.t4 Gene3D G3DSA:1.10.225.10 Saposin 474 552 0.0000000
46 g2782.t4 Gene3D G3DSA:1.10.225.10 Saposin 585 664 0.0000000
48 g2782.t4 Gene3D G3DSA:1.10.225.10 Saposin 678 757 0.0000000
15 g2782.t4 PANTHER PTHR11480 SAPOSIN-RELATED 10 124 0.0000000
21 g2782.t4 PANTHER PTHR11480:SF3 SAPOSIN-LIKE PROTEIN FAMILY 10 124 0.0000000
14 g2782.t4 PANTHER PTHR11480 SAPOSIN-RELATED 147 343 0.0000000
20 g2782.t4 PANTHER PTHR11480:SF3 SAPOSIN-LIKE PROTEIN FAMILY 147 343 0.0000000
12 g2782.t4 PANTHER PTHR11480 SAPOSIN-RELATED 265 440 0.0000000
18 g2782.t4 PANTHER PTHR11480:SF3 SAPOSIN-LIKE PROTEIN FAMILY 265 440 0.0000000
10 g2782.t4 PANTHER PTHR11480 SAPOSIN-RELATED 355 554 0.0000000
16 g2782.t4 PANTHER PTHR11480:SF3 SAPOSIN-LIKE PROTEIN FAMILY 355 554 0.0000000
11 g2782.t4 PANTHER PTHR11480 SAPOSIN-RELATED 469 669 0.0000000
17 g2782.t4 PANTHER PTHR11480:SF3 SAPOSIN-LIKE PROTEIN FAMILY 469 669 0.0000000
13 g2782.t4 PANTHER PTHR11480 SAPOSIN-RELATED 583 759 0.0000000
19 g2782.t4 PANTHER PTHR11480:SF3 SAPOSIN-LIKE PROTEIN FAMILY 583 759 0.0000000
26 g2782.t4 PRINTS PR01797 Saposin signature 376 393 0.0000000
28 g2782.t4 PRINTS PR01797 Saposin signature 425 443 0.0000000
24 g2782.t4 PRINTS PR01797 Saposin signature 589 609 0.0000000
23 g2782.t4 PRINTS PR01797 Saposin signature 637 655 0.0000000
22 g2782.t4 PRINTS PR01797 Saposin signature 679 701 0.0000000
25 g2782.t4 PRINTS PR01797 Saposin signature 711 733 0.0000000
27 g2782.t4 PRINTS PR01797 Saposin signature 733 756 0.0000000
5 g2782.t4 Pfam PF03489 Saposin-like type B, region 2 2 23 0.0001300
8 g2782.t4 Pfam PF03489 Saposin-like type B, region 2 189 222 0.0000000
9 g2782.t4 Pfam PF03489 Saposin-like type B, region 2 310 342 0.0000023
2 g2782.t4 Pfam PF05184 Saposin-like type B, region 1 360 396 0.0000000
7 g2782.t4 Pfam PF03489 Saposin-like type B, region 2 403 435 0.0000000
4 g2782.t4 Pfam PF03489 Saposin-like type B, region 2 517 547 0.0000000
1 g2782.t4 Pfam PF05184 Saposin-like type B, region 1 589 624 0.0000006
3 g2782.t4 Pfam PF03489 Saposin-like type B, region 2 629 661 0.0000041
6 g2782.t4 Pfam PF03489 Saposin-like type B, region 2 723 755 0.0000770
51 g2782.t4 ProSiteProfiles PS50015 Saposin B type domain profile. 1 27 8.5820000
53 g2782.t4 ProSiteProfiles PS50015 Saposin B type domain profile. 146 226 16.4440000
54 g2782.t4 ProSiteProfiles PS50015 Saposin B type domain profile. 266 346 16.8650000
50 g2782.t4 ProSiteProfiles PS50015 Saposin B type domain profile. 358 439 17.7860000
55 g2782.t4 ProSiteProfiles PS50015 Saposin B type domain profile. 474 554 17.9730000
52 g2782.t4 ProSiteProfiles PS50015 Saposin B type domain profile. 585 665 17.2080000
49 g2782.t4 ProSiteProfiles PS50015 Saposin B type domain profile. 678 759 15.5860000
40 g2782.t4 SMART SM00741 sapb_4 55 126 0.0150000
39 g2782.t4 SMART SM00741 sapb_4 148 222 0.0000000
37 g2782.t4 SMART SM00741 sapb_4 268 342 0.0000000
36 g2782.t4 SMART SM00741 sapb_4 360 435 0.0000000
41 g2782.t4 SMART SM00741 sapb_4 476 550 0.0000000
35 g2782.t4 SMART SM00741 sapb_4 587 661 0.0000000
38 g2782.t4 SMART SM00741 sapb_4 680 755 0.0000000
34 g2782.t4 SUPERFAMILY SSF47862 Saposin 55 123 0.0000001
30 g2782.t4 SUPERFAMILY SSF47862 Saposin 147 224 0.0000000
33 g2782.t4 SUPERFAMILY SSF47862 Saposin 307 396 0.0000000
32 g2782.t4 SUPERFAMILY SSF47862 Saposin 400 512 0.0000000
31 g2782.t4 SUPERFAMILY SSF47862 Saposin 586 663 0.0000000
29 g2782.t4 SUPERFAMILY SSF47862 Saposin 680 757 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006665 sphingolipid metabolic process BP
GO:0005764 lysosome CC
GO:0006629 lipid metabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values