General information for g2782.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2782 is located on chr_3: 20266523..20273503 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2782 | g2782.t6 | TSS | g2782.t6 | 20263032 | 20263032 |
| chr_3 | g2782 | g2782.t6 | isoform | g2782.t6 | 20263265 | 20264452 |
| chr_3 | g2782 | g2782.t6 | exon | g2782.t6.exon1 | 20263265 | 20263359 |
| chr_3 | g2782 | g2782.t6 | cds | g2782.t6.CDS1 | 20263358 | 20263359 |
| chr_3 | g2782 | g2782.t6 | exon | g2782.t6.exon2 | 20263789 | 20264452 |
| chr_3 | g2782 | g2782.t6 | cds | g2782.t6.CDS2 | 20263789 | 20264452 |
| chr_3 | g2782 | g2782.t6 | TTS | g2782.t6 | NA | NA |
Sequences
>g2782.t6 Gene=g2782 Length=759
GTGGTATCATCATCATCATCATTAGCAAATAATGTATCACAGAAATATGATGCCGAATGT
TCGAAGGGAATTACTTTTTGGTGTGAGCATTTAATGAATGCAAAAAAATGCAACGCAGTT
GATTTCTGTATTAAAACTGTTTGGGAAAATCATCTTGTGAAGATCGATTCAAATCCACTT
TGTGATGACTGCAAAGATTGGGTGAAGCAAGCTCGAGATTTGTTGGAACGAAAAGAAACT
GCAAATGCAATTATAAGAACTTTAGCGTGGTCATGTGCATTATGTCCAGATACCAATGGA
AGGACAAAATGTAGACAAATTATTTCTAATAATGTGATGGAAATTCTGAAACTTCTTGAC
TCACGAATGAATCCCGATGCAATTTGTTCAGCAATTCATTTCTGCAATAATCGTGAATTT
ACAAAAATATTTGAAAAGGCATTTGAGTTAGAATCTCAACAAAAATTGCAGCAAAAACCT
AGACAAAAGTTGCTACCTTTTACTTGTGGTCAGTGCAATCATATTGGATCAGTTCTAGGA
GAAAAGCTCGCGAATGCAAATCACGATGATATGCTCGAGGGTGTGTTGAAAGTTTGCGGT
CAAATGTCATCATTTTCTGATGCATGTTCAAACCTCGTATTCAAAAACTTCAATGATATC
TACCAGCAACTCCCAAAACTAATAACGAAAGAGAAACTATGTCATTCATCATGTTCACAA
CATTATCAAAATCATGAAGGCATCGTTGATATTTCACCA
>g2782.t6 Gene=g2782 Length=222
MNAKKCNAVDFCIKTVWENHLVKIDSNPLCDDCKDWVKQARDLLERKETANAIIRTLAWS
CALCPDTNGRTKCRQIISNNVMEILKLLDSRMNPDAICSAIHFCNNREFTKIFEKAFELE
SQQKLQQKPRQKLLPFTCGQCNHIGSVLGEKLANANHDDMLEGVLKVCGQMSSFSDACSN
LVFKNFNDIYQQLPKLITKEKLCHSSCSQHYQNHEGIVDISP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g2782.t6 | Gene3D | G3DSA:1.10.225.10 | Saposin | 24 | 106 | 0.0000000 |
| 9 | g2782.t6 | Gene3D | G3DSA:1.10.225.10 | Saposin | 136 | 208 | 0.0000001 |
| 3 | g2782.t6 | PANTHER | PTHR11480 | SAPOSIN-RELATED | 2 | 209 | 0.0000000 |
| 4 | g2782.t6 | PANTHER | PTHR11480:SF84 | BCDNA.GH08312 | 2 | 209 | 0.0000000 |
| 2 | g2782.t6 | Pfam | PF02199 | Saposin A-type domain | 2 | 18 | 0.0000320 |
| 1 | g2782.t6 | Pfam | PF03489 | Saposin-like type B, region 2 | 72 | 104 | 0.0000010 |
| 11 | g2782.t6 | ProSiteProfiles | PS50015 | Saposin B type domain profile. | 26 | 108 | 17.4580000 |
| 7 | g2782.t6 | SMART | SM00741 | sapb_4 | 28 | 104 | 0.0000000 |
| 8 | g2782.t6 | SMART | SM00741 | sapb_4 | 136 | 207 | 0.0150000 |
| 6 | g2782.t6 | SUPERFAMILY | SSF47862 | Saposin | 27 | 106 | 0.0000000 |
| 5 | g2782.t6 | SUPERFAMILY | SSF47862 | Saposin | 136 | 204 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
