General information for g2801.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative WW domain-containing adapter protein with coiled-coil-like protein.
Parent gene
- The parent gene g2801 is located on chr_3: 20356230..20357023 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2801 | g2801.t3 | isoform | g2801.t3 | 20353866 | 20356147 |
| chr_3 | g2801 | g2801.t3 | exon | g2801.t3.exon1 | 20353866 | 20354452 |
| chr_3 | g2801 | g2801.t3 | TTS | g2801.t3 | 20353867 | 20353867 |
| chr_3 | g2801 | g2801.t3 | cds | g2801.t3.CDS1 | 20354377 | 20354452 |
| chr_3 | g2801 | g2801.t3 | exon | g2801.t3.exon2 | 20354514 | 20354641 |
| chr_3 | g2801 | g2801.t3 | cds | g2801.t3.CDS2 | 20354514 | 20354641 |
| chr_3 | g2801 | g2801.t3 | exon | g2801.t3.exon3 | 20354702 | 20354859 |
| chr_3 | g2801 | g2801.t3 | cds | g2801.t3.CDS3 | 20354702 | 20354859 |
| chr_3 | g2801 | g2801.t3 | exon | g2801.t3.exon4 | 20354924 | 20355532 |
| chr_3 | g2801 | g2801.t3 | cds | g2801.t3.CDS4 | 20354924 | 20355532 |
| chr_3 | g2801 | g2801.t3 | exon | g2801.t3.exon5 | 20355599 | 20355777 |
| chr_3 | g2801 | g2801.t3 | cds | g2801.t3.CDS5 | 20355599 | 20355777 |
| chr_3 | g2801 | g2801.t3 | exon | g2801.t3.exon6 | 20355853 | 20356147 |
| chr_3 | g2801 | g2801.t3 | cds | g2801.t3.CDS6 | 20355853 | 20355947 |
| chr_3 | g2801 | g2801.t3 | TSS | g2801.t3 | 20356994 | 20356994 |
Sequences
>g2801.t3 Gene=g2801 Length=1956
AAAAACGATGCCGTGATAGAGATTTAGAATATAAGAGCTATAAGAAATTTAAACTTACTC
GAGAACGTTCAAGTTCTGAGGAGGACCATAAGGAATCTGACAGAGTGTATGAGAAAACGA
CTAGATATGCTGATAGAGGAGATCACAATATTGCTAGACGAGTTGTAGATAAGGAGAGAC
GATTTGGTGACTGGAAAGAAATGATTAGTAAAAATAATGGTAAAAAGTATTATTACAATG
AAAGGGATAAATCCTCACAATGGGATAAGCCCGAAGAATGGGTCGAATTTGAAATGTCAA
AAGAATATCGAGGATATCGGGAAAAGGAGAGAGATAAAAAATGTCGAGATGATAGGTATA
ATGTTAGAAATTACAATAGTAATAAACATTCCAGAGCAAACTCTCGCAGCAGATGGCCAC
CTACACATGAATCTTATTCAACATCATCTTCAGGACATCACAAACGACATGAAGAAAATC
CTGATATGGAAATAAGTCCAGATTCGACTCCAACTTCCGAGCCTAGTTATTCATCTCCGA
CTGCCAATCAACATACAAATAATACAAATGTCAATAGCAATTTAGTAAATCATGATGATG
TAATGACATCACCTAATGGACATTTAAAACATTCAAACATCATCAATTCAAATAACCAAT
TTCATCATCAATTATCAAATGCTTCATCTTCTGCACTCAATGCAATAAGTAAAGCAAACT
CCAATTCCAATAAAAATTCAACAATCACTTCGTCAGCCTCACCATCAACTCATAACTACC
AGTCCCACCATCATCGCTCTTTATCGCCCAACAATGACTTAGAGCGAACGTCAACAACTG
CAGGAAATCTGCACAACAACAATGTTGGTGGTAGTGGGCATGATATAAATTTACTACATC
ACAATTCAAATAGTTTAAGAAATTCACCGTCATACAGTGGCAATAATACCAATTCGACTC
TAACTACTGGCATTAATAACTCTTCGGTTTCTCGCTTAGAATTAAATAATAGTAACAATA
CTAATCATTTAGATGGTCCACCTACTCCCGAACAAGATTTAAATTCTGGTGAACATCGAA
GACTTGAAACAACGTCTGGTATTAGTAGTCTGCAGAGTGTTTTATCAGTTTCACAAGTTT
CGAATCGATTAAACCTTTTAACTCCTAGTCTAGCCAAATTTTTTCGTGCTGATTTGATAA
CACATGTTACTAATTGGCCGTCAGAAGTTCTTGAGAAACAAGCTCAGAAATGTGCAGAAG
AAGTGTACTTGCTGGGCGATCTTGAATGTAGTAAAATTTCAGCAGAAATTCAATGTGCAA
GGAGTATAGTAAGAGTTGCAGAAATTGCTGCAACAATTCAAACACAAAGAAAACTATTTC
TTCAAGAACAAATTAAAAGTTTAGACGAATCACAGACGGAAAATTCTTCAACGATATCAT
ATTGAATTTATCAATGAATGGTTTTCGATTTTCTTTCTTTTAAAAAAGAATTATTGACTG
CAAACGATATGAAGAAAATAGTTTGAATGATAAAGGCATTTAAAAATGGTGCATACAAGA
AAGCAAATCAAATAGAAAAGTGTTGAAAAGTGCAGTTCAAAAGTGAAAATTTTTCGTTAA
CTAAATAAATTGTTGATGCGTCTCCACTTTTATGTATATGCATTATTATTAGGAACATAT
TGTAATAATAGTAATTTTTGATTTTTACGTATTTAACTACATAAACAACACAAACAAATA
ATCTACATAAAACAACTGAAATGTATTTCCAACATTATGTTTTAGTCTTATATAAAAATA
AATTAATTCAAAGTAAGAAACTGATTACACATAACACAAATTTGACACTACAAGAATATT
GAGATTTGATGATTTCTGGCTATCTACATACATTTAGGTCACACCTAGTTTTTAAGATGA
AATAATAAAATCTGGAAAAAGTTTTCATCTTTGCTA
>g2801.t3 Gene=g2801 Length=414
MISKNNGKKYYYNERDKSSQWDKPEEWVEFEMSKEYRGYREKERDKKCRDDRYNVRNYNS
NKHSRANSRSRWPPTHESYSTSSSGHHKRHEENPDMEISPDSTPTSEPSYSSPTANQHTN
NTNVNSNLVNHDDVMTSPNGHLKHSNIINSNNQFHHQLSNASSSALNAISKANSNSNKNS
TITSSASPSTHNYQSHHHRSLSPNNDLERTSTTAGNLHNNNVGGSGHDINLLHHNSNSLR
NSPSYSGNNTNSTLTTGINNSSVSRLELNNSNNTNHLDGPPTPEQDLNSGEHRRLETTSG
ISSLQSVLSVSQVSNRLNLLTPSLAKFFRADLITHVTNWPSEVLEKQAQKCAEEVYLLGD
LECSKISAEIQCARSIVRVAEIAATIQTQRKLFLQEQIKSLDESQTENSSTISY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g2801.t3 | CDD | cd00201 | WW | 5 | 26 | 1.23351E-4 |
| 12 | g2801.t3 | Gene3D | G3DSA:2.20.70.10 | - | 2 | 35 | 2.7E-7 |
| 11 | g2801.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 121 | - |
| 5 | g2801.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 58 | - |
| 10 | g2801.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 81 | - |
| 9 | g2801.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 97 | - |
| 7 | g2801.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 121 | - |
| 8 | g2801.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 210 | - |
| 6 | g2801.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 298 | - |
| 3 | g2801.t3 | PANTHER | PTHR15911 | WW DOMAIN-CONTAINING ADAPTER PROTEIN WITH COILED-COIL | 3 | 266 | 1.0E-43 |
| 2 | g2801.t3 | PANTHER | PTHR15911 | WW DOMAIN-CONTAINING ADAPTER PROTEIN WITH COILED-COIL | 241 | 409 | 1.0E-43 |
| 1 | g2801.t3 | Pfam | PF00397 | WW domain | 3 | 24 | 3.0E-6 |
| 13 | g2801.t3 | ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 1 | 26 | 9.99 |
| 4 | g2801.t3 | SUPERFAMILY | SSF51045 | WW domain | 4 | 29 | 1.44E-6 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K23884 (WW domain-containing adapter protein with coiled-coil)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
