Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative WW domain-containing adapter protein with coiled-coil-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2801 g2801.t4 isoform g2801.t4 20353866 20356404
chr_3 g2801 g2801.t4 exon g2801.t4.exon1 20353866 20354452
chr_3 g2801 g2801.t4 TTS g2801.t4 20353867 20353867
chr_3 g2801 g2801.t4 cds g2801.t4.CDS1 20354377 20354452
chr_3 g2801 g2801.t4 exon g2801.t4.exon2 20354514 20354641
chr_3 g2801 g2801.t4 cds g2801.t4.CDS2 20354514 20354641
chr_3 g2801 g2801.t4 exon g2801.t4.exon3 20354702 20354859
chr_3 g2801 g2801.t4 cds g2801.t4.CDS3 20354702 20354859
chr_3 g2801 g2801.t4 exon g2801.t4.exon4 20354924 20355532
chr_3 g2801 g2801.t4 cds g2801.t4.CDS4 20354924 20355532
chr_3 g2801 g2801.t4 exon g2801.t4.exon5 20355599 20355777
chr_3 g2801 g2801.t4 cds g2801.t4.CDS5 20355599 20355777
chr_3 g2801 g2801.t4 exon g2801.t4.exon6 20355853 20356147
chr_3 g2801 g2801.t4 cds g2801.t4.CDS6 20355853 20355947
chr_3 g2801 g2801.t4 exon g2801.t4.exon7 20356227 20356404
chr_3 g2801 g2801.t4 TSS g2801.t4 20356994 20356994

Sequences

>g2801.t4 Gene=g2801 Length=2134
AATTCCAAATACAACAATCGATATTCAAACTATTATCGAGACAGAGACACATCTCCAAAG
AGAGCAGCACATCGTTCACAATCGCCAGAAGGATCACCGCGAAGTAGATATCATCATCAG
AGCTCTAGCTATAGAAATAAAGATAGAGATAGAGATTATAAGAAGGAAAAATATTCTGAA
AAACGATGCCGTGATAGAGATTTAGAATATAAGAGCTATAAGAAATTTAAACTTACTCGA
GAACGTTCAAGTTCTGAGGAGGACCATAAGGAATCTGACAGAGTGTATGAGAAAACGACT
AGATATGCTGATAGAGGAGATCACAATATTGCTAGACGAGTTGTAGATAAGGAGAGACGA
TTTGGTGACTGGAAAGAAATGATTAGTAAAAATAATGGTAAAAAGTATTATTACAATGAA
AGGGATAAATCCTCACAATGGGATAAGCCCGAAGAATGGGTCGAATTTGAAATGTCAAAA
GAATATCGAGGATATCGGGAAAAGGAGAGAGATAAAAAATGTCGAGATGATAGGTATAAT
GTTAGAAATTACAATAGTAATAAACATTCCAGAGCAAACTCTCGCAGCAGATGGCCACCT
ACACATGAATCTTATTCAACATCATCTTCAGGACATCACAAACGACATGAAGAAAATCCT
GATATGGAAATAAGTCCAGATTCGACTCCAACTTCCGAGCCTAGTTATTCATCTCCGACT
GCCAATCAACATACAAATAATACAAATGTCAATAGCAATTTAGTAAATCATGATGATGTA
ATGACATCACCTAATGGACATTTAAAACATTCAAACATCATCAATTCAAATAACCAATTT
CATCATCAATTATCAAATGCTTCATCTTCTGCACTCAATGCAATAAGTAAAGCAAACTCC
AATTCCAATAAAAATTCAACAATCACTTCGTCAGCCTCACCATCAACTCATAACTACCAG
TCCCACCATCATCGCTCTTTATCGCCCAACAATGACTTAGAGCGAACGTCAACAACTGCA
GGAAATCTGCACAACAACAATGTTGGTGGTAGTGGGCATGATATAAATTTACTACATCAC
AATTCAAATAGTTTAAGAAATTCACCGTCATACAGTGGCAATAATACCAATTCGACTCTA
ACTACTGGCATTAATAACTCTTCGGTTTCTCGCTTAGAATTAAATAATAGTAACAATACT
AATCATTTAGATGGTCCACCTACTCCCGAACAAGATTTAAATTCTGGTGAACATCGAAGA
CTTGAAACAACGTCTGGTATTAGTAGTCTGCAGAGTGTTTTATCAGTTTCACAAGTTTCG
AATCGATTAAACCTTTTAACTCCTAGTCTAGCCAAATTTTTTCGTGCTGATTTGATAACA
CATGTTACTAATTGGCCGTCAGAAGTTCTTGAGAAACAAGCTCAGAAATGTGCAGAAGAA
GTGTACTTGCTGGGCGATCTTGAATGTAGTAAAATTTCAGCAGAAATTCAATGTGCAAGG
AGTATAGTAAGAGTTGCAGAAATTGCTGCAACAATTCAAACACAAAGAAAACTATTTCTT
CAAGAACAAATTAAAAGTTTAGACGAATCACAGACGGAAAATTCTTCAACGATATCATAT
TGAATTTATCAATGAATGGTTTTCGATTTTCTTTCTTTTAAAAAAGAATTATTGACTGCA
AACGATATGAAGAAAATAGTTTGAATGATAAAGGCATTTAAAAATGGTGCATACAAGAAA
GCAAATCAAATAGAAAAGTGTTGAAAAGTGCAGTTCAAAAGTGAAAATTTTTCGTTAACT
AAATAAATTGTTGATGCGTCTCCACTTTTATGTATATGCATTATTATTAGGAACATATTG
TAATAATAGTAATTTTTGATTTTTACGTATTTAACTACATAAACAACACAAACAAATAAT
CTACATAAAACAACTGAAATGTATTTCCAACATTATGTTTTAGTCTTATATAAAAATAAA
TTAATTCAAAGTAAGAAACTGATTACACATAACACAAATTTGACACTACAAGAATATTGA
GATTTGATGATTTCTGGCTATCTACATACATTTAGGTCACACCTAGTTTTTAAGATGAAA
TAATAAAATCTGGAAAAAGTTTTCATCTTTGCTA

>g2801.t4 Gene=g2801 Length=414
MISKNNGKKYYYNERDKSSQWDKPEEWVEFEMSKEYRGYREKERDKKCRDDRYNVRNYNS
NKHSRANSRSRWPPTHESYSTSSSGHHKRHEENPDMEISPDSTPTSEPSYSSPTANQHTN
NTNVNSNLVNHDDVMTSPNGHLKHSNIINSNNQFHHQLSNASSSALNAISKANSNSNKNS
TITSSASPSTHNYQSHHHRSLSPNNDLERTSTTAGNLHNNNVGGSGHDINLLHHNSNSLR
NSPSYSGNNTNSTLTTGINNSSVSRLELNNSNNTNHLDGPPTPEQDLNSGEHRRLETTSG
ISSLQSVLSVSQVSNRLNLLTPSLAKFFRADLITHVTNWPSEVLEKQAQKCAEEVYLLGD
LECSKISAEIQCARSIVRVAEIAATIQTQRKLFLQEQIKSLDESQTENSSTISY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g2801.t4 CDD cd00201 WW 5 26 1.23351E-4
12 g2801.t4 Gene3D G3DSA:2.20.70.10 - 2 35 2.7E-7
11 g2801.t4 MobiDBLite mobidb-lite consensus disorder prediction 1 121 -
5 g2801.t4 MobiDBLite mobidb-lite consensus disorder prediction 9 58 -
10 g2801.t4 MobiDBLite mobidb-lite consensus disorder prediction 59 81 -
9 g2801.t4 MobiDBLite mobidb-lite consensus disorder prediction 82 97 -
7 g2801.t4 MobiDBLite mobidb-lite consensus disorder prediction 98 121 -
8 g2801.t4 MobiDBLite mobidb-lite consensus disorder prediction 173 210 -
6 g2801.t4 MobiDBLite mobidb-lite consensus disorder prediction 271 298 -
3 g2801.t4 PANTHER PTHR15911 WW DOMAIN-CONTAINING ADAPTER PROTEIN WITH COILED-COIL 3 266 1.0E-43
2 g2801.t4 PANTHER PTHR15911 WW DOMAIN-CONTAINING ADAPTER PROTEIN WITH COILED-COIL 241 409 1.0E-43
1 g2801.t4 Pfam PF00397 WW domain 3 24 3.0E-6
13 g2801.t4 ProSiteProfiles PS50020 WW/rsp5/WWP domain profile. 1 26 9.99
4 g2801.t4 SUPERFAMILY SSF51045 WW domain 4 29 1.44E-6

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values