General information for g2802.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative inner dynein arm light chain, axonemal.
Parent gene
- The parent gene g2802 is located on chr_3: 20357233..20358020 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2802 | g2802.t1 | isoform | g2802.t1 | 20357233 | 20358020 |
| chr_3 | g2802 | g2802.t1 | exon | g2802.t1.exon1 | 20357233 | 20357606 |
| chr_3 | g2802 | g2802.t1 | cds | g2802.t1.CDS1 | 20357233 | 20357606 |
| chr_3 | g2802 | g2802.t1 | exon | g2802.t1.exon2 | 20357669 | 20358020 |
| chr_3 | g2802 | g2802.t1 | cds | g2802.t1.CDS2 | 20357669 | 20358020 |
| chr_3 | g2802 | g2802.t1 | TSS | g2802.t1 | NA | NA |
| chr_3 | g2802 | g2802.t1 | TTS | g2802.t1 | NA | NA |
Sequences
>g2802.t1 Gene=g2802 Length=726
ATGACTGAGAAAGAGATTGAATATCAGACCACTTTAGTGCGATATAATAATCCAACATTA
GTAATTAGGCATGATGATAAGAAAGGAGATGAGGAGAAGCGACCAATTTCAGGTGGTGCA
GTGGCTATATCGGATTCACGTAAAGAAACAGATGAAATTCTCAATTCAATTTTGCCACCG
CGATGCTGGGAAGAAGATGGTCAATTATGGATGCAGAAAGTTTCAAGCACTCCAGCCACA
AGACAAGATGTTATTAATCTTCAAGAAATGTTAGATACGCGTTTGCAGGAGAGACAAGCT
CGTGAAACGGGAATTTGTCCTATCAGAGCTGAATTATATAGTCAATGTTTTGATGAAATT
ATTCGTCAAGTAACAATCAATTGTACTGAACGAGGTCTTTTATTACTACGTGTTAGAGAT
GAAATTAATATGCGAGATGAAGCTTATGAGACACTATATTGCAGTTCTGTTGCTTTTGGC
ATGCGCAAGGCACTGCAAGCTCAAGAAGGAAAGGAGCAATTACAAGAGAGAATAAAGCAG
CTTGAAGAAGAAAAGGCATTACTAGAATCAACTATTAGCGATATGAAAACAAAATCTGAT
CAAAATGAACGTCGCAATGCAGAACTTAGAGAATCAGAGGAGAAGAAGCATGCCGAAGAA
ATAGCATTCCTTAAAAAGACTAATTCACAATTAAAATCACAGCTAGAAAATGTTATAAAG
AAATAA
>g2802.t1 Gene=g2802 Length=241
MTEKEIEYQTTLVRYNNPTLVIRHDDKKGDEEKRPISGGAVAISDSRKETDEILNSILPP
RCWEEDGQLWMQKVSSTPATRQDVINLQEMLDTRLQERQARETGICPIRAELYSQCFDEI
IRQVTINCTERGLLLLRVRDEINMRDEAYETLYCSSVAFGMRKALQAQEGKEQLQERIKQ
LEEEKALLESTISDMKTKSDQNERRNAELRESEEKKHAEEIAFLKKTNSQLKSQLENVIK
K
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g2802.t1 | Coils | Coil | Coil | 164 | 215 | - |
| 5 | g2802.t1 | Coils | Coil | Coil | 221 | 241 | - |
| 4 | g2802.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 215 | - |
| 2 | g2802.t1 | PANTHER | PTHR13183:SF0 | AXONEMAL DYNEIN LIGHT INTERMEDIATE POLYPEPTIDE 1 | 5 | 240 | 6.3E-89 |
| 3 | g2802.t1 | PANTHER | PTHR13183 | AXONEMAL INNER ARM DYNEIN LIGHT CHAIN 28 | 5 | 240 | 6.3E-89 |
| 1 | g2802.t1 | Pfam | PF10211 | Axonemal dynein light chain | 52 | 236 | 4.3E-83 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K10410 (dynein axonemal light intermediate chain 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
