General information for g2806.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as RNA helicase aquarius.
Parent gene
- The parent gene g2806 is located on chr_3: 20370884..20373278 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2806 | g2806.t1 | isoform | g2806.t1 | 20369828 | 20370884 |
| chr_3 | g2806 | g2806.t1 | exon | g2806.t1.exon1 | 20369828 | 20370076 |
| chr_3 | g2806 | g2806.t1 | cds | g2806.t1.CDS1 | 20369828 | 20370076 |
| chr_3 | g2806 | g2806.t1 | exon | g2806.t1.exon2 | 20370139 | 20370732 |
| chr_3 | g2806 | g2806.t1 | cds | g2806.t1.CDS2 | 20370139 | 20370732 |
| chr_3 | g2806 | g2806.t1 | exon | g2806.t1.exon3 | 20370798 | 20370884 |
| chr_3 | g2806 | g2806.t1 | cds | g2806.t1.CDS3 | 20370798 | 20370884 |
| chr_3 | g2806 | g2806.t1 | TSS | g2806.t1 | 20370954 | 20370954 |
| chr_3 | g2806 | g2806.t1 | TTS | g2806.t1 | NA | NA |
Sequences
>g2806.t1 Gene=g2806 Length=930
ATGAAAAGAAAAATCAAACAAAAGAATCTTGTAACACAAAACAAGCAAGTAACATTGACG
CAATTTGAAGATGATCATATAACTGAGCTTGCAAACATCTATTGGACATCAGAAAAGAAA
AAGGAAGAACTTTCACCATTCGATGCAACTATTGTGACGAAAATTTATGAAAATGAAATC
GTTAAAGGAGATAATAGAAGAATCGTTATGCTGGAATTTAACAGATGTCTTGAAAACTTC
TTATGGCCTAATTTCAATCAAGATTCATCCGATAAGCATTTGATGTCTATTATATTCCTG
CTAAATGAAAAATTTAGAGAACGAATTGAAGTCTGGAAGATTTTTGATATGAACTCTGAA
AATTTTCCTATATTCTTTAATAAGTGTCTCATGAAATGCTTAGAAAATTTCGATGCTGAA
ATAGCTAAAAAACAAATTATTAGAGAGCAAACGGCATTGCTCGTATTCTTAAACAATTGT
TTTCGTAGCATGGAAGTTGAAATTTGTAGAGAACAAGTTAAAAAATTGGTTTCACTTTCA
ATTTGGAGCTGTTTACAGCCAAAGCGTCGAGAACAAGAGCTCAATTTAATTCCCGAATGG
AGAAAATATTGGAAGAAACTTCAAAAGCGAGATAAACCTGAAATTAAAGAAAAGCTAGAA
TGGGAACGTCACTTTCTTCAGAACTTGATTAAGAAATTTTTGAATATTGTTGAAAAGCTA
CCAGAGAATGGATCAATAAATACTGATGTCGTCTACTATTGTGAAAGATTTCTTGAATTT
ATGATAGATCTTGAAGCACTTTTGCCAACACGTCGCTTCTTTAATACAGTATTAGATGAT
TCACATCTTATCGTTAGATGCCAAATATCACCATTGATTGGTCGTTCTGAAGGAAAACTT
TTTTCTCAGGTGAGTTTCTTTTTATTTTAA
>g2806.t1 Gene=g2806 Length=309
MKRKIKQKNLVTQNKQVTLTQFEDDHITELANIYWTSEKKKEELSPFDATIVTKIYENEI
VKGDNRRIVMLEFNRCLENFLWPNFNQDSSDKHLMSIIFLLNEKFRERIEVWKIFDMNSE
NFPIFFNKCLMKCLENFDAEIAKKQIIREQTALLVFLNNCFRSMEVEICREQVKKLVSLS
IWSCLQPKRREQELNLIPEWRKYWKKLQKRDKPEIKEKLEWERHFLQNLIKKFLNIVEKL
PENGSINTDVVYYCERFLEFMIDLEALLPTRRFFNTVLDDSHLIVRCQISPLIGRSEGKL
FSQVSFFLF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g2806.t1 | PANTHER | PTHR10887 | DNA2/NAM7 HELICASE FAMILY | 147 | 295 | 0 |
| 3 | g2806.t1 | PANTHER | PTHR10887:SF5 | RNA HELICASE AQUARIUS | 147 | 295 | 0 |
| 1 | g2806.t1 | Pfam | PF16399 | Intron-binding protein aquarius N-terminus | 23 | 305 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
## Warning: Removed 1 row(s) containing missing values (geom_path).
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005681 | spliceosomal complex | CC |
| GO:0000398 | mRNA splicing, via spliceosome | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
