General information for g2807.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as ATP-binding cassette sub-family F member 2.
Parent gene
- The parent gene g2807 is located on chr_3: 20373127..20374057 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2807 | g2807.t10 | TSS | g2807.t10 | 20371015 | 20371015 |
| chr_3 | g2807 | g2807.t10 | isoform | g2807.t10 | 20371567 | 20372515 |
| chr_3 | g2807 | g2807.t10 | exon | g2807.t10.exon1 | 20371567 | 20371763 |
| chr_3 | g2807 | g2807.t10 | cds | g2807.t10.CDS1 | 20371567 | 20371763 |
| chr_3 | g2807 | g2807.t10 | exon | g2807.t10.exon2 | 20371826 | 20371974 |
| chr_3 | g2807 | g2807.t10 | cds | g2807.t10.CDS2 | 20371826 | 20371974 |
| chr_3 | g2807 | g2807.t10 | exon | g2807.t10.exon3 | 20372032 | 20372247 |
| chr_3 | g2807 | g2807.t10 | cds | g2807.t10.CDS3 | 20372032 | 20372247 |
| chr_3 | g2807 | g2807.t10 | exon | g2807.t10.exon4 | 20372314 | 20372515 |
| chr_3 | g2807 | g2807.t10 | cds | g2807.t10.CDS4 | 20372314 | 20372513 |
| chr_3 | g2807 | g2807.t10 | TTS | g2807.t10 | NA | NA |
Sequences
>g2807.t10 Gene=g2807 Length=764
ATGCCATCTGATTCAAAGAAAAAGGAACAGCAACGAAAAAAGGATGCTCGCAATAAGAAG
ATTAATGAAGCTTCCAAAAAAGAACAGCCTCAATCAAATGGTATTGCAAATGGTAAAGAA
CCCAAAAAAGAATTGACTGAAGAAGAAATTCTTTGTCAAAAATTAGAGGAGGATGCTAGA
TTGGCAGCTGATGCACGTTCATCGACTGGAACACAAGCAAACCATCGTTTATCAAGAGAT
ATTAAAATTGAGAATTTTTCTATCACATTTTATGGCAACGAGATTCTATTAGATACAACT
TTAGAATTGAATTGTGGAAGACGTTATGGTTTAGTTGGTAGTAATGGATGTGGAAAATCG
ACTTTATTGGCTGTTTTAGGAAATCGTGAAGTGCCCATACAAGATTTTATTGACATTTTC
TTCTTGGCTCGTGAAGTTGCAGCTTCTTCGAAAACTGCTTTAGAAATGGTCATGGAAGTC
GATCAAGAGCGTATCAAACTCGAAGCACTTGCAGATGAATTAAGCGGATGTGACGATGAT
GAATCTCAAGAGCAATTGATCGATATTTACGATCGACTGGATGAAATGCAATCTGATTTA
GCCGAAACTAAAGCATCTCGTATTTTACACGGTTTGGGATTTGATAAAGCAATGCAAAGA
AAAGCCTGTCAAGATTTTAGTGGTGGTTGGCGTATGAGAATTGCACTCGCAAGAGCACTC
TATGTGAAACCTCATTTGCTGTTACTTGATGATCCAACTAATCA
>g2807.t10 Gene=g2807 Length=254
MPSDSKKKEQQRKKDARNKKINEASKKEQPQSNGIANGKEPKKELTEEEILCQKLEEDAR
LAADARSSTGTQANHRLSRDIKIENFSITFYGNEILLDTTLELNCGRRYGLVGSNGCGKS
TLLAVLGNREVPIQDFIDIFFLAREVAASSKTALEMVMEVDQERIKLEALADELSGCDDD
ESQEQLIDIYDRLDEMQSDLAETKASRILHGLGFDKAMQRKACQDFSGGWRMRIALARAL
YVKPHLLLLDDPTN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g2807.t10 | Coils | Coil | Coil | 7 | 27 | - |
| 7 | g2807.t10 | Gene3D | G3DSA:3.40.50.300 | - | 43 | 254 | 3.6E-31 |
| 5 | g2807.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - |
| 6 | g2807.t10 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - |
| 2 | g2807.t10 | PANTHER | PTHR19211 | ATP-BINDING TRANSPORT PROTEIN-RELATED | 1 | 254 | 1.7E-75 |
| 3 | g2807.t10 | PANTHER | PTHR19211:SF15 | ATP-BINDING CASSETTE SUB-FAMILY F MEMBER 2 | 1 | 254 | 1.7E-75 |
| 1 | g2807.t10 | Pfam | PF00005 | ABC transporter | 98 | 254 | 9.3E-22 |
| 4 | g2807.t10 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 76 | 254 | 9.48E-26 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
