General information for g2807.t18
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ATP-binding cassette sub-family F member 2.
Parent gene
- The parent gene g2807 is located on chr_3: 20373127..20374057 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2807 | g2807.t18 | isoform | g2807.t18 | 20372785 | 20373819 |
| chr_3 | g2807 | g2807.t18 | exon | g2807.t18.exon1 | 20372785 | 20373129 |
| chr_3 | g2807 | g2807.t18 | cds | g2807.t18.CDS1 | 20372836 | 20373129 |
| chr_3 | g2807 | g2807.t18 | exon | g2807.t18.exon2 | 20373186 | 20373220 |
| chr_3 | g2807 | g2807.t18 | cds | g2807.t18.CDS2 | 20373186 | 20373220 |
| chr_3 | g2807 | g2807.t18 | exon | g2807.t18.exon3 | 20373278 | 20373819 |
| chr_3 | g2807 | g2807.t18 | cds | g2807.t18.CDS3 | 20373278 | 20373338 |
| chr_3 | g2807 | g2807.t18 | TTS | g2807.t18 | 20374045 | 20374045 |
| chr_3 | g2807 | g2807.t18 | TSS | g2807.t18 | NA | NA |
Sequences
>g2807.t18 Gene=g2807 Length=922
GGTAATTATGACACTTTCGTTAAAACACGTTTAGAACTGCTCACTAATCAAATGAAGCAG
TACAATTGGGAGCAAGATCAAATTGCTCACATGAAGCAATACATTGCACGATTCGGAAAA
GGATCTAATGCGAGACAAGCACAATCGAAAGAGAAAGTCCTAGCCAAAATGGTGGCAGGT
GGTCTAACTGAAAAAAATATCGATGAAAAAACATTGAGTTTCTATTTTCCCTCATGTCAA
AAGCTTCCACCACCGATAATTATGGTTCAAGACGTGTCTTTTCGTTATAATGATAAAACA
CCATATATATACAAGAATTTAGAATTTGGTATTGATTTAGAAACTCGATTAGCATTGGTG
GGTCCTAACGGTGCCGGTAAGAAAATCAACTTTATTGAAGCTTTTGTGTCAAGAAATTGT
TCCAACATCAGGAATGATTAGATGCAATCCACATTTGAAAATTGCAAAATATAATCAGCA
TTTGCATGAACTTCTTGATATGGAAATTAGTCCTTTAGACTATATGCTCAAATCGTTCCC
CGAGGTTAAAGAAAAAGAAGAGATGAGGAAAATTATTGGCCGATATGGTCTTACTGGCAG
ACAACAAGTATGCCCAATTAGACAACTTTCTGATGGTCAAAGGTGTCGTTTAGTTTTTGC
TTATTTGGCGTTTCAATGTCCACACTTATTATTATTTGATGAACCTAGCAATGGACTTGA
TATGGAAACTATTGATGCTTTAGCAGAAGCCATCAATGAGTTTGAAGGCGGCATGGTTCT
CGTGTCACACGATTTCCGTTTGATCAATCAGACTGTCTCGGATATATGGATTTGTGAAAA
TGGAACTGTCACGAAATGGAATGGAACGATCATGGATTACAAAGAAAACTTGAAGAAAAA
TATTTCTAAAGAAGCTCGATAA
>g2807.t18 Gene=g2807 Length=129
MKQYNWEQDQIAHMKQYIARFGKGSNARQAQSKEKVLAKMVAGGLTEKNIDEKTLSFYFP
SCQKLPPPIIMVQDVSFRYNDKTPYIYKNLEFGIDLETRLALVGPNGAGKKINFIEAFVS
RNCSNIRND
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g2807.t18 | Gene3D | G3DSA:3.40.50.300 | - | 35 | 112 | 0 |
| 2 | g2807.t18 | PANTHER | PTHR19211 | ATP-BINDING TRANSPORT PROTEIN-RELATED | 1 | 111 | 0 |
| 3 | g2807.t18 | PANTHER | PTHR19211:SF15 | ATP-BINDING CASSETTE SUB-FAMILY F MEMBER 2 | 1 | 111 | 0 |
| 1 | g2807.t18 | Pfam | PF12848 | ABC transporter | 1 | 42 | 0 |
| 4 | g2807.t18 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 50 | 110 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
