General information for g2813.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Calcium-activated potassium channel slowpoke.
Parent gene
- The parent gene g2813 is located on chr_3: 20393495..20420634 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2813 | g2813.t1 | isoform | g2813.t1 | 20393495 | 20420634 |
| chr_3 | g2813 | g2813.t1 | exon | g2813.t1.exon1 | 20393495 | 20393554 |
| chr_3 | g2813 | g2813.t1 | cds | g2813.t1.CDS1 | 20393495 | 20393554 |
| chr_3 | g2813 | g2813.t1 | exon | g2813.t1.exon2 | 20393633 | 20393646 |
| chr_3 | g2813 | g2813.t1 | cds | g2813.t1.CDS2 | 20393633 | 20393646 |
| chr_3 | g2813 | g2813.t1 | exon | g2813.t1.exon3 | 20393705 | 20393846 |
| chr_3 | g2813 | g2813.t1 | cds | g2813.t1.CDS3 | 20393705 | 20393846 |
| chr_3 | g2813 | g2813.t1 | exon | g2813.t1.exon4 | 20393908 | 20394270 |
| chr_3 | g2813 | g2813.t1 | cds | g2813.t1.CDS4 | 20393908 | 20394270 |
| chr_3 | g2813 | g2813.t1 | exon | g2813.t1.exon5 | 20394339 | 20394752 |
| chr_3 | g2813 | g2813.t1 | cds | g2813.t1.CDS5 | 20394339 | 20394752 |
| chr_3 | g2813 | g2813.t1 | exon | g2813.t1.exon6 | 20394817 | 20395041 |
| chr_3 | g2813 | g2813.t1 | cds | g2813.t1.CDS6 | 20394817 | 20395041 |
| chr_3 | g2813 | g2813.t1 | exon | g2813.t1.exon7 | 20395100 | 20395274 |
| chr_3 | g2813 | g2813.t1 | cds | g2813.t1.CDS7 | 20395100 | 20395274 |
| chr_3 | g2813 | g2813.t1 | exon | g2813.t1.exon8 | 20395520 | 20395585 |
| chr_3 | g2813 | g2813.t1 | cds | g2813.t1.CDS8 | 20395520 | 20395585 |
| chr_3 | g2813 | g2813.t1 | exon | g2813.t1.exon9 | 20395834 | 20395990 |
| chr_3 | g2813 | g2813.t1 | cds | g2813.t1.CDS9 | 20395834 | 20395990 |
| chr_3 | g2813 | g2813.t1 | exon | g2813.t1.exon10 | 20396105 | 20396137 |
| chr_3 | g2813 | g2813.t1 | cds | g2813.t1.CDS10 | 20396105 | 20396137 |
| chr_3 | g2813 | g2813.t1 | exon | g2813.t1.exon11 | 20396702 | 20396773 |
| chr_3 | g2813 | g2813.t1 | cds | g2813.t1.CDS11 | 20396702 | 20396773 |
| chr_3 | g2813 | g2813.t1 | exon | g2813.t1.exon12 | 20401082 | 20401114 |
| chr_3 | g2813 | g2813.t1 | cds | g2813.t1.CDS12 | 20401082 | 20401114 |
| chr_3 | g2813 | g2813.t1 | exon | g2813.t1.exon13 | 20402216 | 20402292 |
| chr_3 | g2813 | g2813.t1 | cds | g2813.t1.CDS13 | 20402216 | 20402292 |
| chr_3 | g2813 | g2813.t1 | exon | g2813.t1.exon14 | 20402355 | 20402513 |
| chr_3 | g2813 | g2813.t1 | cds | g2813.t1.CDS14 | 20402355 | 20402513 |
| chr_3 | g2813 | g2813.t1 | exon | g2813.t1.exon15 | 20402942 | 20403054 |
| chr_3 | g2813 | g2813.t1 | cds | g2813.t1.CDS15 | 20402942 | 20403054 |
| chr_3 | g2813 | g2813.t1 | exon | g2813.t1.exon16 | 20403890 | 20404198 |
| chr_3 | g2813 | g2813.t1 | cds | g2813.t1.CDS16 | 20403890 | 20404198 |
| chr_3 | g2813 | g2813.t1 | exon | g2813.t1.exon17 | 20405508 | 20405613 |
| chr_3 | g2813 | g2813.t1 | cds | g2813.t1.CDS17 | 20405508 | 20405613 |
| chr_3 | g2813 | g2813.t1 | exon | g2813.t1.exon18 | 20407037 | 20407147 |
| chr_3 | g2813 | g2813.t1 | cds | g2813.t1.CDS18 | 20407037 | 20407147 |
| chr_3 | g2813 | g2813.t1 | exon | g2813.t1.exon19 | 20415040 | 20415081 |
| chr_3 | g2813 | g2813.t1 | cds | g2813.t1.CDS19 | 20415040 | 20415081 |
| chr_3 | g2813 | g2813.t1 | exon | g2813.t1.exon20 | 20415166 | 20415215 |
| chr_3 | g2813 | g2813.t1 | cds | g2813.t1.CDS20 | 20415166 | 20415215 |
| chr_3 | g2813 | g2813.t1 | exon | g2813.t1.exon21 | 20418184 | 20418351 |
| chr_3 | g2813 | g2813.t1 | cds | g2813.t1.CDS21 | 20418184 | 20418351 |
| chr_3 | g2813 | g2813.t1 | exon | g2813.t1.exon22 | 20418424 | 20418575 |
| chr_3 | g2813 | g2813.t1 | cds | g2813.t1.CDS22 | 20418424 | 20418575 |
| chr_3 | g2813 | g2813.t1 | exon | g2813.t1.exon23 | 20418638 | 20418749 |
| chr_3 | g2813 | g2813.t1 | cds | g2813.t1.CDS23 | 20418638 | 20418749 |
| chr_3 | g2813 | g2813.t1 | exon | g2813.t1.exon24 | 20418819 | 20418976 |
| chr_3 | g2813 | g2813.t1 | cds | g2813.t1.CDS24 | 20418819 | 20418976 |
| chr_3 | g2813 | g2813.t1 | exon | g2813.t1.exon25 | 20420349 | 20420634 |
| chr_3 | g2813 | g2813.t1 | cds | g2813.t1.CDS25 | 20420349 | 20420634 |
| chr_3 | g2813 | g2813.t1 | TSS | g2813.t1 | NA | NA |
| chr_3 | g2813 | g2813.t1 | TTS | g2813.t1 | NA | NA |
Sequences
>g2813.t1 Gene=g2813 Length=3597
ATGTCGGGTTGTGACGAAGAAGTAATAACCACAGAACCATCTTTTGATAATTGCCTTCAA
GTTCGAAAATGGTGGTGTTTTCTACTGTCAAGTATTTTCACATTCTTGGCGGGGCTTCTT
ATAGTTCTATTATGGAGAGCTTTTGCATTTATTTGTTGTCGTAAAGAGCCAGAACTATCA
CCAAATGATCCCAAACAGAAAGAGCAAAAAGCCAATCGTGGCAAACAAGAGTTCGAGGGA
ACTTTTATGACAGAAGCTAAAGATTGGGCTGGAGAATTGATATCAGTGGTTCTTGTTTTT
ATCCTCAGTATCGCATCACTTATCATTTACTTTATTGATGCATCAAATGATAAAGTGGAG
CATTGTGAAAAATGGAGCAACAATATTACACAACAAATCGATCTTGCATTCAATATATTT
TTTATGGTGTACTTTTTTATACGATTCATAGCAGCATCTGATAAGTTTTGGTTTATGTTA
GAAATGTACAGTTTTGTCGACTATTTCACAATTCCCCCGTCCTTTGTGTCGATATATTTA
GACCGTACGTGGATTGGTCTACGTTTCCTTCGAGCGCTAAGACTTATGACTGTCCCAGAT
ATACTCCAATATCTAAATATATTAAAAACTTCAAGTTCTATTCGTTTAGCACAACTAGTA
TCAATTTTTATATCCGTATGGTTAACAGCTGCCGGAATTATTCATTTACTCGAAAATTCT
GGTGATCCATTGGAATTTAATAATCCACATCAGTTATCATATTGGACATGTGTTTATTTT
CTCATCGTAACAATGTCCACTGTCGGTTATGGTGATGTGTTTTGTGAGACAGTTCTCGGT
CGAACATTTCTTGTGTTTTTCCTACTCGTCGGTTTGGCTATGTTTGCGAGCTCTATTCCG
GAAATTATTGAACTCGTCGGTTCAGGGAGCAAATATTCGGGTGAACTGAAAAGAGAACAT
GGAAAGAGACACATCGTCGTATGTGGACACATAACTTATGAATCTGTTTCACATTTTCTA
AAAGACTTTTTACATGAGGATCGAGAAGATGTGGATGTGGAAGTTGTGTTTCTCCATAGG
CATGTCCCTGGCCTTGAACTAGAAGGGCTTTTCAAAAGACATTTTACTACAGTGGAGTTT
TTTCAAGGCACAATCATGAACCCAATTGATTTACAACGAGTCAAGGTGCACGAAGCTGAT
GCATGTTTAGTGTTAGCAAATAAATATTGTCAGGATCCCGATGCAGAAGATGCTGCTAAC
ATTATGCGCGTTATTTCAATCAAAAACTATAGCGATGACATTCGAGTTATCATTCAATTG
ATGCAATATCATAATAAAGCATACTTACTAAATATTCCATCATGGGACTGGAAACAAGGT
GATGATGTCATTTGTTTGGCTGAATTAAAATTAGGTTTCATCGCTCAGAGTTGTCTCGCA
CCTGGATTCTCAACAATGATGGCCAACTTGTTCGCTATGAGATCATTTAAAACGTCTCCT
GACATGCAAATTTGGCAAAATGATTACTTGCAAGGTACCGGATGTGAGATGTATACAGAA
ACCCTTTCACCTTCTTTTACCGGAATGACATTTCCACAAGCCAGCGAGCTTTGTTTTACA
AAATTAAAGTTGTTATTGCTAGCGATAGAAATTAAAGGCGGAGAAGAGGGAAATGATAGC
AAAATTTCGATCAATCCAAGAGGTGCTAAAATTCTGGCTAACACGCAAGGATTCTTTATT
GCGCAAAGTGCGGATGAAGTGAAAAGGGCATGGTTTTATTGTAAAGCATGTCATGATGAT
ATCAAAGATGAAACGCTTATAAAGAAGTGCAAGTGTAAAAATTTGACAGCGCAATCAAGG
AAATATGATGAGCTAGATGATCATCCTGCCGCACCGACATTTACTCCTCCCGAACTTCCT
AAAAGAGTGCATGTGCGGGGCGTAACTGGGGATGTCACAAGAGAACGAGATGAGATAAAC
CTCATAAATCGCAATAAGCGAATGCCATCAGTTAGTTCTGGATCTCATCAAATGTTAAAC
TCAATACAAACAAAACAAGTTAACAAAGTTAAACCAAACGTTAATCGACCTCCCAATGGT
GCCGAAGGTGTTGTTGTGTCTCCCTCATCATACAATCGACCTCCGGATACAGAAGCAAAC
CCATATGCGGGATATCAACTAGCATATGAAGTTAAAAAGCTCATGCCTACGGCGAGAGGT
GGATCATCTACGCAAAATTCAAATGGAGGTGTTACACTTCAAGCAGGCATTGCTGATGAT
CAATCTAAGGACTTTGACTTTGAAAAGACAGAAATGAAATACGATTCGACTGGAATGTTT
CATTGGAGTCCTGCAAGGAGTCTTGAAGATTGTATTTTGGATCGAAATCAAGCGGCTATG
ACAGTGTTAAATGGTCATGTTGTCGTTTGTTTATTTGCCGATCCTGATAGTCCACTCATC
GGTCTAAGAAATTTAGTTATGCCTTTACGCGCATCAAACTTTCATTATCATGAATTAAAA
CATGTTGTTATTGTTGGTTCTGTTGATTACATTCGTAGAGAATGGAAGATGTTACAAAAC
TTACCAAAAATATCTGTACTTAATGGATCACCACTTAGTCGCGCTGATTTGCGTGCGGTT
AATGTAAATTTATGTGATATGTGCTGCATTTTATCGGCTAAAGTACCCTCAAACGATGAT
CCAACGTTGGCTGACAAAGAGGCCATTTTAGCTTCTCTTAATATCAAGGCTATGACATTC
GATGATACAATAGGTGTGCTTAGTCAGCGCGGTGAACAAGACAATCTAACACCAGTTGGC
AGTCCAATTGTTCTACAACGTCGAGGCTCAGTATATGGTGCAAACGTTCCAATGATTACT
GAATTGGTCAATGATAGCAACGTACAGTTTCTCGATCAAGACGATGATGACGATCCCGAT
ACAGAGCTTTACTTAACACAACCCTTTGCTTGTGGTACTGCTTTTGCCGTTAGCGTACTA
GATTCATTAATGTCAACGACATATTTTAATCAAAACGCCTTAACATTAATTCGTTCATTA
ATCACTGGTGGTGCAACTCCCGAACTTGAACTTATTTTGGCTGAAGGTGCTGGACTTCGT
GGTGGTTATAGTACACCAGAAAGTCTTAGTAATCGTGATAGATGTCGTGTTGGACAAATC
TCGTTTTATGATGGACCTTTAGCACAATTTGGCGAAGCAGGAAAATATGGTGATTTGTTT
GTAGCAGCACTCAAATCATATGGAATGCTTTGCATTGGACTTTATAGATTTCGTGATACC
AGTTCAAGTTGTGATGCTAGTAGTAAACGATATGTTATAACTAATCCACCAGATGATTTC
TCATTGTTACCTACTGATCAGGTCTTTGTGCTAATGCAATTTGATCCAGGTCTTGAGTAT
AAGCCTCAAACTCGACCAAATGCACAAAACTCAGGCGGTGCAGTGGGAATCAACACAGGA
AATATTGTTAGTAGTACTCGACAAACCAATAATAATCAAGTAGTGCTCTTACTGATGGTC
CTTACAGTTACATCTAACGTAAAGCTTCAGTCTTTGTGCATAACATTGTTCATTTAA
>g2813.t1 Gene=g2813 Length=1198
MSGCDEEVITTEPSFDNCLQVRKWWCFLLSSIFTFLAGLLIVLLWRAFAFICCRKEPELS
PNDPKQKEQKANRGKQEFEGTFMTEAKDWAGELISVVLVFILSIASLIIYFIDASNDKVE
HCEKWSNNITQQIDLAFNIFFMVYFFIRFIAASDKFWFMLEMYSFVDYFTIPPSFVSIYL
DRTWIGLRFLRALRLMTVPDILQYLNILKTSSSIRLAQLVSIFISVWLTAAGIIHLLENS
GDPLEFNNPHQLSYWTCVYFLIVTMSTVGYGDVFCETVLGRTFLVFFLLVGLAMFASSIP
EIIELVGSGSKYSGELKREHGKRHIVVCGHITYESVSHFLKDFLHEDREDVDVEVVFLHR
HVPGLELEGLFKRHFTTVEFFQGTIMNPIDLQRVKVHEADACLVLANKYCQDPDAEDAAN
IMRVISIKNYSDDIRVIIQLMQYHNKAYLLNIPSWDWKQGDDVICLAELKLGFIAQSCLA
PGFSTMMANLFAMRSFKTSPDMQIWQNDYLQGTGCEMYTETLSPSFTGMTFPQASELCFT
KLKLLLLAIEIKGGEEGNDSKISINPRGAKILANTQGFFIAQSADEVKRAWFYCKACHDD
IKDETLIKKCKCKNLTAQSRKYDELDDHPAAPTFTPPELPKRVHVRGVTGDVTRERDEIN
LINRNKRMPSVSSGSHQMLNSIQTKQVNKVKPNVNRPPNGAEGVVVSPSSYNRPPDTEAN
PYAGYQLAYEVKKLMPTARGGSSTQNSNGGVTLQAGIADDQSKDFDFEKTEMKYDSTGMF
HWSPARSLEDCILDRNQAAMTVLNGHVVVCLFADPDSPLIGLRNLVMPLRASNFHYHELK
HVVIVGSVDYIRREWKMLQNLPKISVLNGSPLSRADLRAVNVNLCDMCCILSAKVPSNDD
PTLADKEAILASLNIKAMTFDDTIGVLSQRGEQDNLTPVGSPIVLQRRGSVYGANVPMIT
ELVNDSNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSTTYFNQNALTLIRSL
ITGGATPELELILAEGAGLRGGYSTPESLSNRDRCRVGQISFYDGPLAQFGEAGKYGDLF
VAALKSYGMLCIGLYRFRDTSSSCDASSKRYVITNPPDDFSLLPTDQVFVLMQFDPGLEY
KPQTRPNAQNSGGAVGINTGNIVSSTRQTNNNQVVLLLMVLTVTSNVKLQSLCITLFI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 29 | g2813.t1 | Gene3D | G3DSA:1.20.120.350 | - | 29 | 205 | 3.5E-10 |
| 28 | g2813.t1 | Gene3D | G3DSA:1.10.287.70 | - | 213 | 317 | 1.5E-17 |
| 27 | g2813.t1 | Gene3D | G3DSA:3.40.50.720 | - | 318 | 453 | 5.7E-16 |
| 26 | g2813.t1 | Gene3D | G3DSA:3.40.50.720 | - | 799 | 945 | 4.9E-7 |
| 4 | g2813.t1 | PANTHER | PTHR10027 | CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN | 20 | 617 | 0.0 |
| 6 | g2813.t1 | PANTHER | PTHR10027:SF28 | CALCIUM-ACTIVATED POTASSIUM CHANNEL SUBUNIT ALPHA-1 | 20 | 617 | 0.0 |
| 3 | g2813.t1 | PANTHER | PTHR10027 | CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN | 771 | 1135 | 0.0 |
| 5 | g2813.t1 | PANTHER | PTHR10027:SF28 | CALCIUM-ACTIVATED POTASSIUM CHANNEL SUBUNIT ALPHA-1 | 771 | 1135 | 0.0 |
| 16 | g2813.t1 | PRINTS | PR00169 | Potassium channel signature | 132 | 155 | 4.2E-6 |
| 14 | g2813.t1 | PRINTS | PR00169 | Potassium channel signature | 158 | 178 | 4.2E-6 |
| 15 | g2813.t1 | PRINTS | PR00169 | Potassium channel signature | 251 | 273 | 4.2E-6 |
| 13 | g2813.t1 | PRINTS | PR00169 | Potassium channel signature | 280 | 306 | 4.2E-6 |
| 7 | g2813.t1 | PRINTS | PR01449 | Calcium-activated BK potassium channel alpha subunit signature | 354 | 374 | 4.0E-45 |
| 10 | g2813.t1 | PRINTS | PR01449 | Calcium-activated BK potassium channel alpha subunit signature | 397 | 417 | 4.0E-45 |
| 12 | g2813.t1 | PRINTS | PR01449 | Calcium-activated BK potassium channel alpha subunit signature | 430 | 443 | 4.0E-45 |
| 9 | g2813.t1 | PRINTS | PR01449 | Calcium-activated BK potassium channel alpha subunit signature | 476 | 491 | 4.0E-45 |
| 8 | g2813.t1 | PRINTS | PR01449 | Calcium-activated BK potassium channel alpha subunit signature | 526 | 543 | 4.0E-45 |
| 11 | g2813.t1 | PRINTS | PR01449 | Calcium-activated BK potassium channel alpha subunit signature | 970 | 985 | 4.0E-45 |
| 2 | g2813.t1 | Pfam | PF00520 | Ion transport protein | 98 | 304 | 3.2E-16 |
| 1 | g2813.t1 | Pfam | PF03493 | Calcium-activated BK potassium channel alpha subunit | 453 | 549 | 8.7E-38 |
| 34 | g2813.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 23 | - |
| 42 | g2813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 24 | 48 | - |
| 37 | g2813.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 49 | 92 | - |
| 46 | g2813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 93 | 112 | - |
| 31 | g2813.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 113 | 132 | - |
| 39 | g2813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 133 | 151 | - |
| 36 | g2813.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 152 | 156 | - |
| 44 | g2813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 157 | 180 | - |
| 30 | g2813.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 181 | 215 | - |
| 45 | g2813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 216 | 237 | - |
| 35 | g2813.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 238 | 251 | - |
| 41 | g2813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 252 | 271 | - |
| 33 | g2813.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 272 | 282 | - |
| 43 | g2813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 283 | 303 | - |
| 38 | g2813.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 304 | 1173 | - |
| 40 | g2813.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1174 | 1197 | - |
| 32 | g2813.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1198 | 1198 | - |
| 24 | g2813.t1 | SUPERFAMILY | SSF81324 | Voltage-gated potassium channels | 96 | 305 | 3.77E-32 |
| 25 | g2813.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 322 | 487 | 1.97E-8 |
| 18 | g2813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 27 | 49 | - |
| 20 | g2813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 90 | 112 | - |
| 17 | g2813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 133 | 152 | - |
| 19 | g2813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 157 | 179 | - |
| 22 | g2813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 219 | 237 | - |
| 23 | g2813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 252 | 271 | - |
| 21 | g2813.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 278 | 300 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0055085 | transmembrane transport | BP |
| GO:0006813 | potassium ion transport | BP |
| GO:0005216 | ion channel activity | MF |
| GO:0060072 | large conductance calcium-activated potassium channel activity | MF |
| GO:0006811 | ion transport | BP |
KEGG
Orthology
- This transcript has been annotated with K04936 (potassium large conductance calcium-activated channel subfamily M alpha member 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed