General information for g2818.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Testis-expressed protein 10-like protein.
Parent gene
- The parent gene g2818 is located on chr_3: 20433008..20434652 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2818 | g2818.t1 | TSS | g2818.t1 | 20431026 | 20431026 |
| chr_3 | g2818 | g2818.t1 | isoform | g2818.t1 | 20431083 | 20433008 |
| chr_3 | g2818 | g2818.t1 | exon | g2818.t1.exon1 | 20431083 | 20431849 |
| chr_3 | g2818 | g2818.t1 | cds | g2818.t1.CDS1 | 20431083 | 20431849 |
| chr_3 | g2818 | g2818.t1 | exon | g2818.t1.exon2 | 20431904 | 20433008 |
| chr_3 | g2818 | g2818.t1 | cds | g2818.t1.CDS2 | 20431904 | 20433008 |
| chr_3 | g2818 | g2818.t1 | TTS | g2818.t1 | 20433042 | 20433042 |
Sequences
>g2818.t1 Gene=g2818 Length=1872
ATGGGCAAGCATAAGAAATTCCTTAAATCTGAGAAAGCAAAAGTTAAGCTAAAAGGAAAT
AAATTGAAAGATCATCAAAATGTTACTAAAACCGATTTCAAAGTGAGAAAAATCATAATT
CCTGAACAATTGAAAAATGTCCAACAACTTGACAGCGGTGAACGAAAAAAACACAATATT
CGAGATTGTCTTACACGACTTGGAAATTCGGCATCTGCAGAAGCAATTAGTAATTTGAAA
GAAATTATTCTATATCAACCAGAAGATTTTCAAAAACATCTTGAGGCTATCATCAAAACA
GTGTCAAATTTATCACTGTCAATTGAAAAGAACGATCGTAAAGAATGCTTTAAAATAATG
GATTTGGTGTTTAGTCAAATAAATGAAATCAATTTGAAACCATTCTTTCCAATTTTAACT
AAATATCTAACGTGTGCTATGACACATATAAAATCAGCAATTCAAGAAGATTCATTGCTT
ATGCTCGATTTACTTTTGAAACATGCACCGAAATTTGTAGCTTTTGAAAAGGATAATATT
CTTAAGCCATACTTGGATTTAGTTTCAAAAACTAGAACAGACAATACCTCTGAAAGAACT
TTATCAATGCAAATGGGAAATAAAATTACTAATATTAAATGGCGTAAAAGTGTTCTTGAA
CGTTTGATATTATTCCTAAAATGTATCAATAATCAACGAATTAATAATAATGCTGGTACG
AAGAAAAATACTATTGAAGATATAATTGCACAAGATAGTTCAAAAAGCAATAATTTTCTT
GGAAATCCTTTTGTCAATTTGACAACTGTATCAAATGTATCACTCTCAATGATAGAGAAT
AATTCGAAAAAAGTTACTGCAGAATACGATAATGATATAAATGAGAAAACAATGGACAAA
TATATACATACAATCATGCCTTTGATGTTTGAAATATGGATTGAACTTGTTGGCACTGAT
AAAAATGCATCTGCATCTATAATTACACAAGAAAATGCACTCATTCTCAAATCAATTATG
GATATAATTATTGAACTCTTTTCTATGATTGAGTCTCAAAATGCTTTGAAACTACAATTT
TTAAAAAAATATCAAGATAATTTTGACAAACACCTTATAACGCATTTTCCTTACCTGCAA
ACCGGTATCAATTCAAATAAAAAAGTAGCTGTAGATTCAGGAGGTGATAAATGCATCTAT
CAAAATCTCTCTATTGCAATATTGTTCTTTAATTTTGGAACAAAAAATCATTCAAGATTT
GGAAAATGTAAGGAGAAAATTTTTAAATTTGTTGAAGAAAACATTGAAGGATGGAGAGCA
AAAGATCAGGAATTTAATAGTTTAATGAAGAAACTAATAAGAACTGTGTTCTCTTTAGAA
ACGAGAAAAACATTTCCAAATGAATGCAATAATACCTTTAATGTTCTTATAAAGAAATGT
AATGTTGATCAGTCTACATACGATCCAAAAATGGCGCTTGTCTGTGAAATTATACAGAAT
AGTGGAAATAGTAAAAAAGATTCTATTTACGACAATCTTTTGACAAAAATGATTGAAGCT
ATTGCAAATATGGAACATGTTCCTATCCATTTAATAAAGACCATTTCAATTATAGCAAAG
ACTGGAAATCAAATTTTGTATGAAGCTTTAGAGAAAAATGCTATATGTATTTTGAATAAT
TTGCAAAATAAACTTAAAATTACCGGTACATTGACGGATGATCAAGAACAATGGAAAATG
GAAATAATAAATTTATTTTATTGGATTAATAATAAAGAGATCCTTCAAGACATACTTTCA
CATACATCAGTAAATAAAGGCATACTCTTTGTAAAACTTGATGAACTTATTAGAATGAAA
TTACAAATTTAA
>g2818.t1 Gene=g2818 Length=623
MGKHKKFLKSEKAKVKLKGNKLKDHQNVTKTDFKVRKIIIPEQLKNVQQLDSGERKKHNI
RDCLTRLGNSASAEAISNLKEIILYQPEDFQKHLEAIIKTVSNLSLSIEKNDRKECFKIM
DLVFSQINEINLKPFFPILTKYLTCAMTHIKSAIQEDSLLMLDLLLKHAPKFVAFEKDNI
LKPYLDLVSKTRTDNTSERTLSMQMGNKITNIKWRKSVLERLILFLKCINNQRINNNAGT
KKNTIEDIIAQDSSKSNNFLGNPFVNLTTVSNVSLSMIENNSKKVTAEYDNDINEKTMDK
YIHTIMPLMFEIWIELVGTDKNASASIITQENALILKSIMDIIIELFSMIESQNALKLQF
LKKYQDNFDKHLITHFPYLQTGINSNKKVAVDSGGDKCIYQNLSIAILFFNFGTKNHSRF
GKCKEKIFKFVEENIEGWRAKDQEFNSLMKKLIRTVFSLETRKTFPNECNNTFNVLIKKC
NVDQSTYDPKMALVCEIIQNSGNSKKDSIYDNLLTKMIEAIANMEHVPIHLIKTISIIAK
TGNQILYEALEKNAICILNNLQNKLKITGTLTDDQEQWKMEIINLFYWINNKEILQDILS
HTSVNKGILFVKLDELIRMKLQI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g2818.t1 | PANTHER | PTHR16056:SF2 | TESTIS-EXPRESSED PROTEIN 10 | 1 | 508 | 0 |
| 3 | g2818.t1 | PANTHER | PTHR16056 | UNCHARACTERIZED | 1 | 508 | 0 |
| 1 | g2818.t1 | Pfam | PF12333 | Rix1 complex component involved in 60S ribosome maturation | 132 | 226 | 0 |
| 4 | g2818.t1 | SUPERFAMILY | SSF48371 | ARM repeat | 62 | 517 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K14827 (pre-rRNA-processing protein IPI1)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
