General information for g2826.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Aldose 1-epimerase.
Parent gene
- The parent gene g2826 is located on chr_3: 20456270..20462615 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2826 | g2826.t2 | TTS | g2826.t2 | 20454550 | 20454550 |
| chr_3 | g2826 | g2826.t2 | isoform | g2826.t2 | 20454686 | 20462615 |
| chr_3 | g2826 | g2826.t2 | exon | g2826.t2.exon1 | 20454686 | 20454775 |
| chr_3 | g2826 | g2826.t2 | cds | g2826.t2.CDS1 | 20454686 | 20454775 |
| chr_3 | g2826 | g2826.t2 | exon | g2826.t2.exon2 | 20454879 | 20455010 |
| chr_3 | g2826 | g2826.t2 | cds | g2826.t2.CDS2 | 20454879 | 20455010 |
| chr_3 | g2826 | g2826.t2 | exon | g2826.t2.exon3 | 20456270 | 20456976 |
| chr_3 | g2826 | g2826.t2 | cds | g2826.t2.CDS3 | 20456270 | 20456976 |
| chr_3 | g2826 | g2826.t2 | exon | g2826.t2.exon4 | 20457626 | 20457719 |
| chr_3 | g2826 | g2826.t2 | cds | g2826.t2.CDS4 | 20457626 | 20457701 |
| chr_3 | g2826 | g2826.t2 | exon | g2826.t2.exon5 | 20462245 | 20462322 |
| chr_3 | g2826 | g2826.t2 | exon | g2826.t2.exon6 | 20462521 | 20462615 |
| chr_3 | g2826 | g2826.t2 | TSS | g2826.t2 | 20462866 | 20462866 |
Sequences
>g2826.t2 Gene=g2826 Length=1196
GTCAGTTTGACAATATTTATGAGTGTAGACGTTGTATACAGATAGCTAGTTGCTTGCGGC
TTACAATGAGTTACTGTAGGGAGCTATTTGATTTCCGTGCTTAATGACTAAATAAAGAAA
TACAAACAGACGATATCGTCGGAAATAAGATGGAGAGTAGAACGATAAGAAAGTTGATTT
CGTATGGTGCGATGATAACAAGCTGTAAAATCCCATCAAAAAGTGGTGAAGTTGCCGACA
TTGTTTTAGGATTTGACAGCATTGAAGGCTATCAAAAGGATGGAAATTCGGCTTATATTG
GAAGTCTTATGGGTCGCGTTGCAAATCGTATTGCTAATGGAGAATTTCATTTAAATGGCG
AAAAGCATGAATTGGCAAAGAATTTTCTCGGCAAGCACAACTTGCACGGTGGCATAATTG
GATTCGATAAATTTAACTGGGACTCGTATGTTGATGAAAATTTGGTTTTTTTGACTCACG
TTAGTCCCGATGACTACGAAGGATTTCCTGGTACAGTTTTAGTTACTGCTGCTTGTGAGC
TAAGGAATGATGATTCTTTTTCAATGAAACTGAATGCTGTTACCAACAAACCAACTTTGA
TTAACATGAGCAATCATAGCTACTTTAATCTTGCTGGACATAATGCAGGCTATAAAGAAT
TATATAAGCATAAATTAACGATAAATGCTGATAGAATTTTGTCAATTGATGATGAACAAA
TACCAACTGGGGAATTTCAGCATGTTGCAGAGTCTGCTTTTGACTTCCGTCTACCTATGG
AAATTGGAAAAGCAATTGCAAAAACTCCCAAAAACGGATTCGATCATAATTTTTGTATTA
CATCTGGAACTTCGCAAACATTGACTTTTGTGGCTCGAGTGTTTCATCCAAAATCGGGAC
GGTTCATGGAAGTTTATAGCGATCAGCCATCTGTGCTCTTTTACACGTCAAATAATCTCC
CCGATCCTTGCAATATAAATCCTACATTAGCAGACGATGTTTGTGAAGAAGGTTCATCAT
CTGTAGTTGGCAAAAATGGTGCACAATATAAAAAACATGGATCTTTCTGTTTGGAAACAC
AGAAATATGCTGATGCAATTCACCATGAAAATTTTCCATCAATCATTCTTGTCCCAGGCA
AGGAGTATGAACACGAAACTGTTTATAAATTTGGCATTTATGATGACGAGAACTGA
>g2826.t2 Gene=g2826 Length=334
MITSCKIPSKSGEVADIVLGFDSIEGYQKDGNSAYIGSLMGRVANRIANGEFHLNGEKHE
LAKNFLGKHNLHGGIIGFDKFNWDSYVDENLVFLTHVSPDDYEGFPGTVLVTAACELRND
DSFSMKLNAVTNKPTLINMSNHSYFNLAGHNAGYKELYKHKLTINADRILSIDDEQIPTG
EFQHVAESAFDFRLPMEIGKAIAKTPKNGFDHNFCITSGTSQTLTFVARVFHPKSGRFME
VYSDQPSVLFYTSNNLPDPCNINPTLADDVCEEGSSSVVGKNGAQYKKHGSFCLETQKYA
DAIHHENFPSIILVPGKEYEHETVYKFGIYDDEN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g2826.t2 | CDD | cd09019 | galactose_mutarotase_like | 2 | 327 | 0 |
| 5 | g2826.t2 | Gene3D | G3DSA:2.70.98.10 | - | 1 | 330 | 0 |
| 2 | g2826.t2 | PANTHER | PTHR10091:SF0 | ALDOSE 1-EPIMERASE | 2 | 328 | 0 |
| 3 | g2826.t2 | PANTHER | PTHR10091 | ALDOSE-1-EPIMERASE | 2 | 328 | 0 |
| 6 | g2826.t2 | PIRSF | PIRSF005096 | GALM | 1 | 330 | 0 |
| 1 | g2826.t2 | Pfam | PF01263 | Aldose 1-epimerase | 2 | 326 | 0 |
| 4 | g2826.t2 | SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 2 | 327 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0030246 | carbohydrate binding | MF |
| GO:0016853 | isomerase activity | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0003824 | catalytic activity | MF |
| GO:0019318 | hexose metabolic process | BP |
KEGG
Orthology
- This transcript has been annotated with K01785 (aldose 1-epimerase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed