Gene loci information

Transcript annotation

  • This transcript has been annotated as Apyrase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2831 g2831.t1 TSS g2831.t1 20492584 20492584
chr_3 g2831 g2831.t1 isoform g2831.t1 20492612 20494297
chr_3 g2831 g2831.t1 exon g2831.t1.exon1 20492612 20494297
chr_3 g2831 g2831.t1 cds g2831.t1.CDS1 20492612 20494297
chr_3 g2831 g2831.t1 TTS g2831.t1 NA NA

Sequences

>g2831.t1 Gene=g2831 Length=1686
ATGAGATTCGTTTACATTCTCTTGAGTTTTGTTGCATTACTTTCGGTCATTACTATAGCA
GTAGTGTTGATAGTAGTCTTTACAGAGATAAATGAAGAGAATAAGCCAGAAACCGGTGAA
CTTTTTGAACTTTCAATAATTCACATAAACGATTTTCACGCGCGATTTGATGAAACTAAC
GAGAAATCAATGCCATGTGTTGATGGAGAAGTTTGCATTGGTGGATATGCAAGATTAGCA
ACTGTTGTTCATTTCTTGAAGTCACAGCGTAAAAATGCAATTTTTTTAAATGCAGGTGAC
AACTTTCAAGGAACTTTTTGGTACAACTTGCTACGTTACAATGTCACAACTCATTTTTTA
AACCTTTTACCTGCTGACGCTATTACAATTGGTAATCACGAGTTCACACATCGTGTTGAA
GGCATGATTCCATTTTTAAAATTAATTACATCTCCCGTTGTTATCGCAAATATTGACGAT
CGTTATCAACCGAATATACAGAATTTATATAAAAAATCAATTGTTATAGAAAGAAGTGGC
AGAAAAATTGGAATTATTGGTGTAATATTTAGAGAGACAGCAGAAGTTGCAAATACTGAT
AATTTAAAATTTACGAATGAAATTGATGCAATAAGAAATGAAAGTACAAAGCTTAGACAA
ATTGACGGTGTGAACATTATCATTGTGTTATCTCATTGTGGATTAGTTCGTGACAAGGAA
ATTGCTCTAGAGACAGGAGACTTTGTTGATGTAATTGTTGGAGGTCATTCACATACCTTT
CTCTATACATCAAAAGACACTCGTTATCCTGGACCAGATCAAGCCGTAGGGCCATATCCG
ATTGTGGTTACACCTAAATCAGGAAGAGACCGAAAAGTTCTTATCGTTCAAGCTTCTGCT
TTTACCAAATATGTCGGTGATTTGCGTGTTTATTTCAATCAAGCAGGACATGTTCGATTT
TATGATGGCAATCCAATTTTCCTAAGCAATAATATCAAACAAGATGCAAATGTACTTGAG
GAATTAAAACCATGGCGTGATGAAGTCATTCGAAGAGGACAACGAATTATTGGATCAACA
AATGTAGATCTTTTTCATGATATATGTCGACATGATGAATGTGCTTTAGGCAGCTTTGCA
ACAGATGCATTTATGTATGAGACGCAATTAGCTTTTCCACATGTTCAAATAAATGCTGCA
ATCATACAAGCTGCAGGTATGCGAAATGGTTTTCGTATTAGTAATATAAGCTTTTCAGAT
ATTGTCGCTTTTATGCCTTTCGAAAACACATTGGACATTATGGAATTAAGAGGGGAAGTG
ATTGTTGATATGTTTGAGCATAGTGTTTCACGTTCATTTGTAGAACATGAATTTATTGGG
ATACATATGATGCAGGTGTCGGGCTTTCGAATTTCATTTAATGTTACAAGACCAGTGGGT
CAACGCGTGAAATCACTTGAAATTAAAACAACTCAATCGGATTATGAAATTGTCCATCCC
AACAAGTATTACACACTCATTATTCCTTCTTTCATTGCGGCTGGTGGTGATGGTTTCACT
ATGTTGAAACTAAAAAGGAAAAATCATCGCGTTGGACTTTTAGATATTGACATAATGGAA
TCTTATATTGCTCGAAAATCACCTATAACACATCAAATCGATGGTCGAATTAATATGTTA
ATTTAA

>g2831.t1 Gene=g2831 Length=561
MRFVYILLSFVALLSVITIAVVLIVVFTEINEENKPETGELFELSIIHINDFHARFDETN
EKSMPCVDGEVCIGGYARLATVVHFLKSQRKNAIFLNAGDNFQGTFWYNLLRYNVTTHFL
NLLPADAITIGNHEFTHRVEGMIPFLKLITSPVVIANIDDRYQPNIQNLYKKSIVIERSG
RKIGIIGVIFRETAEVANTDNLKFTNEIDAIRNESTKLRQIDGVNIIIVLSHCGLVRDKE
IALETGDFVDVIVGGHSHTFLYTSKDTRYPGPDQAVGPYPIVVTPKSGRDRKVLIVQASA
FTKYVGDLRVYFNQAGHVRFYDGNPIFLSNNIKQDANVLEELKPWRDEVIRRGQRIIGST
NVDLFHDICRHDECALGSFATDAFMYETQLAFPHVQINAAIIQAAGMRNGFRISNISFSD
IVAFMPFENTLDIMELRGEVIVDMFEHSVSRSFVEHEFIGIHMMQVSGFRISFNVTRPVG
QRVKSLEIKTTQSDYEIVHPNKYYTLIIPSFIAAGGDGFTMLKLKRKNHRVGLLDIDIME
SYIARKSPITHQIDGRINMLI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
20 g2831.t1 CDD cd07409 MPP_CD73_N 44 328 1.88629E-132
13 g2831.t1 Gene3D G3DSA:3.60.21.10 - 42 352 5.6E-87
14 g2831.t1 Gene3D G3DSA:3.90.780.10 - 355 559 1.2E-48
3 g2831.t1 PANTHER PTHR11575 5’-NUCLEOTIDASE-RELATED 18 559 5.4E-197
4 g2831.t1 PANTHER PTHR11575:SF32 APYRASE-LIKE PROTEIN 18 559 5.4E-197
10 g2831.t1 PRINTS PR01607 Apyrase family signature 42 60 3.5E-34
6 g2831.t1 PRINTS PR01607 Apyrase family signature 222 239 3.5E-34
8 g2831.t1 PRINTS PR01607 Apyrase family signature 242 265 3.5E-34
5 g2831.t1 PRINTS PR01607 Apyrase family signature 293 313 3.5E-34
7 g2831.t1 PRINTS PR01607 Apyrase family signature 415 438 3.5E-34
9 g2831.t1 PRINTS PR01607 Apyrase family signature 497 516 3.5E-34
2 g2831.t1 Pfam PF00149 Calcineurin-like phosphoesterase 45 259 1.4E-13
1 g2831.t1 Pfam PF02872 5’-nucleotidase, C-terminal domain 357 523 1.0E-28
15 g2831.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 6 -
19 g2831.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 7 27 -
17 g2831.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 28 502 -
18 g2831.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 503 522 -
16 g2831.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 523 561 -
22 g2831.t1 ProSitePatterns PS00785 5’-nucleotidase signature 1. 44 56 -
12 g2831.t1 SUPERFAMILY SSF56300 Metallo-dependent phosphatases 42 349 6.46E-77
11 g2831.t1 SUPERFAMILY SSF55816 5’-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 355 558 4.32E-46
21 g2831.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 5 27 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0046872 metal ion binding MF
GO:0016787 hydrolase activity MF
GO:0000166 nucleotide binding MF
GO:0016788 hydrolase activity, acting on ester bonds MF
GO:0009166 nucleotide catabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed