General information for g2833.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Kallikrein-14.
Parent gene
- The parent gene g2833 is located on chr_3: 20496981..20498180 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2833 | g2833.t1 | TTS | g2833.t1 | 20496868 | 20496868 |
| chr_3 | g2833 | g2833.t1 | isoform | g2833.t1 | 20496981 | 20498180 |
| chr_3 | g2833 | g2833.t1 | exon | g2833.t1.exon1 | 20496981 | 20497377 |
| chr_3 | g2833 | g2833.t1 | cds | g2833.t1.CDS1 | 20496981 | 20497377 |
| chr_3 | g2833 | g2833.t1 | exon | g2833.t1.exon2 | 20497446 | 20497735 |
| chr_3 | g2833 | g2833.t1 | cds | g2833.t1.CDS2 | 20497446 | 20497735 |
| chr_3 | g2833 | g2833.t1 | exon | g2833.t1.exon3 | 20497801 | 20498087 |
| chr_3 | g2833 | g2833.t1 | cds | g2833.t1.CDS3 | 20497801 | 20498087 |
| chr_3 | g2833 | g2833.t1 | exon | g2833.t1.exon4 | 20498156 | 20498180 |
| chr_3 | g2833 | g2833.t1 | cds | g2833.t1.CDS4 | 20498156 | 20498180 |
| chr_3 | g2833 | g2833.t1 | TSS | g2833.t1 | 20498309 | 20498309 |
Sequences
>g2833.t1 Gene=g2833 Length=999
ATGCTCAATTATATTTATTTGATGGATAAGGGAAATATATTTATTACCTTGCTTTTTTCC
ACACAATTGTCAGTCATTAATTTACTTTTAAACACTGCTGAAAGCATGAATAGTGAGATT
ATTTTGCAAGTTATTTTATTTTTCTTTATTGCATTTTCTAATGCACAAAATAGTCCAAAA
ATTATCGGCGGTTTTAATGTCTCGTCAATTGAAGGTTTTGAATATCAAGTTTCATTAAGA
GATGCATCTTATGAATCATCAAAATTTGGAAGCGGACACATTTGTGGTGGTAGTTTGATA
GATTACAACAAAGTACTCACAGCATCACATTGTGTACACAACGGAAGAAAATTCTTGGCA
GCACATTATTTTGTTGCTGTAATGGGAAATTTAGATCTATTTGATCGAAATGTAAATACA
GTAGTACGACGAATTAAGAAAATTATTGGTCATCCCAATTACAATGCTGACACATTTGAA
AATGACATTGCAGTACTCATTTTAAATGATCTTATACCTGTGAATCATCCTACAGCTAAA
CCTATTCCTCTCTCAAATTTTGAAGCGCGTGCCGGTCAAAATTGTACAACTGCTGGATGG
GGAACAATCGAATATGATGAAAATGCGAGTGCTGTAAGATGGTTAATGGCTGTAAACTTA
AATGTAAATTTAAGAGCAGCTTGCAATAAACCGTCGAGTCATGCTGGGAGTGTTCAAAAG
GGGATGTTTTGTGCTGGACCATTTGAAGGTGGAAAAGACACATGTCAGGGTGATAGCGGT
GGCGGCTTTGTTTGTAAAGGAGTTTTAGTAGGTGTGACTTCTCATGGCTTTGAATGCGGA
CTACCAAATTATCCAGGAATTTATATGGATGTCTCTTATTATCGAAAATGGATCGAAACA
GAAGGCAGAAGCAGTAGCAACGATGCCGGTTCAGTTTGGTCAAATGTCAAAAATTATCTT
TACTCTATGTCTGTTGCTGTGACTATGTTCATAAAATAA
>g2833.t1 Gene=g2833 Length=332
MLNYIYLMDKGNIFITLLFSTQLSVINLLLNTAESMNSEIILQVILFFFIAFSNAQNSPK
IIGGFNVSSIEGFEYQVSLRDASYESSKFGSGHICGGSLIDYNKVLTASHCVHNGRKFLA
AHYFVAVMGNLDLFDRNVNTVVRRIKKIIGHPNYNADTFENDIAVLILNDLIPVNHPTAK
PIPLSNFEARAGQNCTTAGWGTIEYDENASAVRWLMAVNLNVNLRAACNKPSSHAGSVQK
GMFCAGPFEGGKDTCQGDSGGGFVCKGVLVGVTSHGFECGLPNYPGIYMDVSYYRKWIET
EGRSSSNDAGSVWSNVKNYLYSMSVAVTMFIK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g2833.t1 | CDD | cd00190 | Tryp_SPc | 61 | 299 | 5.19534E-77 |
| 8 | g2833.t1 | Gene3D | G3DSA:2.40.10.10 | - | 71 | 292 | 1.3E-60 |
| 7 | g2833.t1 | Gene3D | G3DSA:2.40.10.10 | - | 74 | 299 | 1.3E-60 |
| 2 | g2833.t1 | PANTHER | PTHR24276 | POLYSERASE-RELATED | 56 | 304 | 2.6E-60 |
| 5 | g2833.t1 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 96 | 111 | 8.0E-11 |
| 3 | g2833.t1 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 158 | 172 | 8.0E-11 |
| 4 | g2833.t1 | PRINTS | PR00722 | Chymotrypsin serine protease family (S1) signature | 252 | 264 | 8.0E-11 |
| 1 | g2833.t1 | Pfam | PF00089 | Trypsin | 62 | 298 | 7.5E-52 |
| 9 | g2833.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 11 | - |
| 12 | g2833.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 30 | - |
| 11 | g2833.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 31 | 35 | - |
| 13 | g2833.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 36 | 55 | - |
| 10 | g2833.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 56 | 332 | - |
| 16 | g2833.t1 | ProSitePatterns | PS00134 | Serine proteases, trypsin family, histidine active site. | 106 | 111 | - |
| 17 | g2833.t1 | ProSiteProfiles | PS50240 | Serine proteases, trypsin domain profile. | 61 | 303 | 29.403 |
| 15 | g2833.t1 | SMART | SM00020 | trypsin_2 | 60 | 298 | 6.0E-70 |
| 6 | g2833.t1 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 45 | 300 | 9.91E-67 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
