General information for g2833.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Kallikrein-14.
Parent gene
- The parent gene g2833 is located on chr_3: 20496981..20498180 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2833 | g2833.t2 | TTS | g2833.t2 | 20496868 | 20496868 |
| chr_3 | g2833 | g2833.t2 | isoform | g2833.t2 | 20496981 | 20497735 |
| chr_3 | g2833 | g2833.t2 | exon | g2833.t2.exon1 | 20496981 | 20497377 |
| chr_3 | g2833 | g2833.t2 | cds | g2833.t2.CDS1 | 20496981 | 20497377 |
| chr_3 | g2833 | g2833.t2 | exon | g2833.t2.exon2 | 20497446 | 20497735 |
| chr_3 | g2833 | g2833.t2 | cds | g2833.t2.CDS2 | 20497446 | 20497666 |
| chr_3 | g2833 | g2833.t2 | TSS | g2833.t2 | 20498042 | 20498042 |
Sequences
>g2833.t2 Gene=g2833 Length=687
GTACTCACAGCATCACATTGTGTACACAACGGAAGAAAATTCTTGGCAGCACATTATTTT
GTTGCTGTAATGGGAAATTTAGATCTATTTGATCGAAATGTAAATACAGTAGTACGACGA
ATTAAGAAAATTATTGGTCATCCCAATTACAATGCTGACACATTTGAAAATGACATTGCA
GTACTCATTTTAAATGATCTTATACCTGTGAATCATCCTACAGCTAAACCTATTCCTCTC
TCAAATTTTGAAGCGCGTGCCGGTCAAAATTGTACAACTGCTGGATGGGGAACAATCGAA
TATGATGAAAATGCGAGTGCTGTAAGATGGTTAATGGCTGTAAACTTAAATGTAAATTTA
AGAGCAGCTTGCAATAAACCGTCGAGTCATGCTGGGAGTGTTCAAAAGGGGATGTTTTGT
GCTGGACCATTTGAAGGTGGAAAAGACACATGTCAGGGTGATAGCGGTGGCGGCTTTGTT
TGTAAAGGAGTTTTAGTAGGTGTGACTTCTCATGGCTTTGAATGCGGACTACCAAATTAT
CCAGGAATTTATATGGATGTCTCTTATTATCGAAAATGGATCGAAACAGAAGGCAGAAGC
AGTAGCAACGATGCCGGTTCAGTTTGGTCAAATGTCAAAAATTATCTTTACTCTATGTCT
GTTGCTGTGACTATGTTCATAAAATAA
>g2833.t2 Gene=g2833 Length=205
MGNLDLFDRNVNTVVRRIKKIIGHPNYNADTFENDIAVLILNDLIPVNHPTAKPIPLSNF
EARAGQNCTTAGWGTIEYDENASAVRWLMAVNLNVNLRAACNKPSSHAGSVQKGMFCAGP
FEGGKDTCQGDSGGGFVCKGVLVGVTSHGFECGLPNYPGIYMDVSYYRKWIETEGRSSSN
DAGSVWSNVKNYLYSMSVAVTMFIK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g2833.t2 | CDD | cd00190 | Tryp_SPc | 2 | 172 | 0.000 |
| 6 | g2833.t2 | Gene3D | G3DSA:2.40.10.10 | - | 3 | 172 | 0.000 |
| 7 | g2833.t2 | Gene3D | G3DSA:2.40.10.10 | - | 55 | 165 | 0.000 |
| 2 | g2833.t2 | PANTHER | PTHR24276 | POLYSERASE-RELATED | 9 | 174 | 0.000 |
| 3 | g2833.t2 | PANTHER | PTHR24276:SF78 | AT20289P-RELATED | 9 | 174 | 0.000 |
| 1 | g2833.t2 | Pfam | PF00089 | Trypsin | 13 | 171 | 0.000 |
| 8 | g2833.t2 | ProSiteProfiles | PS50240 | Serine proteases, trypsin domain profile. | 1 | 176 | 21.651 |
| 5 | g2833.t2 | SMART | SM00020 | trypsin_2 | 2 | 171 | 0.000 |
| 4 | g2833.t2 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 4 | 173 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
