Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Kallikrein-14.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2833 g2833.t3 TTS g2833.t3 20496868 20496868
chr_3 g2833 g2833.t3 isoform g2833.t3 20496981 20498180
chr_3 g2833 g2833.t3 exon g2833.t3.exon1 20496981 20497377
chr_3 g2833 g2833.t3 cds g2833.t3.CDS1 20496981 20497377
chr_3 g2833 g2833.t3 exon g2833.t3.exon2 20497446 20497735
chr_3 g2833 g2833.t3 cds g2833.t3.CDS2 20497446 20497735
chr_3 g2833 g2833.t3 exon g2833.t3.exon3 20497801 20498180
chr_3 g2833 g2833.t3 cds g2833.t3.CDS3 20497801 20498007
chr_3 g2833 g2833.t3 TSS g2833.t3 20498309 20498309

Sequences

>g2833.t3 Gene=g2833 Length=1067
ATGCTCAATTATATTTATTTGATGGGTAGTTTTTGTAAAGTTCGTCATTGCTTCTTTTCA
CTGATTTTTTTCTCTTATCATCAATTCATTTAGATAAGGGAAATATATTTATTACCTTGC
TTTTTTCCACACAATTGTCAGTCATTAATTTACTTTTAAACACTGCTGAAAGCATGAATA
GTGAGATTATTTTGCAAGTTATTTTATTTTTCTTTATTGCATTTTCTAATGCACAAAATA
GTCCAAAAATTATCGGCGGTTTTAATGTCTCGTCAATTGAAGGTTTTGAATATCAAGTTT
CATTAAGAGATGCATCTTATGAATCATCAAAATTTGGAAGCGGACACATTTGTGGTGGTA
GTTTGATAGATTACAACAAAGTACTCACAGCATCACATTGTGTACACAACGGAAGAAAAT
TCTTGGCAGCACATTATTTTGTTGCTGTAATGGGAAATTTAGATCTATTTGATCGAAATG
TAAATACAGTAGTACGACGAATTAAGAAAATTATTGGTCATCCCAATTACAATGCTGACA
CATTTGAAAATGACATTGCAGTACTCATTTTAAATGATCTTATACCTGTGAATCATCCTA
CAGCTAAACCTATTCCTCTCTCAAATTTTGAAGCGCGTGCCGGTCAAAATTGTACAACTG
CTGGATGGGGAACAATCGAATATGATGAAAATGCGAGTGCTGTAAGATGGTTAATGGCTG
TAAACTTAAATGTAAATTTAAGAGCAGCTTGCAATAAACCGTCGAGTCATGCTGGGAGTG
TTCAAAAGGGGATGTTTTGTGCTGGACCATTTGAAGGTGGAAAAGACACATGTCAGGGTG
ATAGCGGTGGCGGCTTTGTTTGTAAAGGAGTTTTAGTAGGTGTGACTTCTCATGGCTTTG
AATGCGGACTACCAAATTATCCAGGAATTTATATGGATGTCTCTTATTATCGAAAATGGA
TCGAAACAGAAGGCAGAAGCAGTAGCAACGATGCCGGTTCAGTTTGGTCAAATGTCAAAA
ATTATCTTTACTCTATGTCTGTTGCTGTGACTATGTTCATAAAATAA

>g2833.t3 Gene=g2833 Length=297
MNSEIILQVILFFFIAFSNAQNSPKIIGGFNVSSIEGFEYQVSLRDASYESSKFGSGHIC
GGSLIDYNKVLTASHCVHNGRKFLAAHYFVAVMGNLDLFDRNVNTVVRRIKKIIGHPNYN
ADTFENDIAVLILNDLIPVNHPTAKPIPLSNFEARAGQNCTTAGWGTIEYDENASAVRWL
MAVNLNVNLRAACNKPSSHAGSVQKGMFCAGPFEGGKDTCQGDSGGGFVCKGVLVGVTSH
GFECGLPNYPGIYMDVSYYRKWIETEGRSSSNDAGSVWSNVKNYLYSMSVAVTMFIK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g2833.t3 CDD cd00190 Tryp_SPc 26 264 1.59385E-76
9 g2833.t3 Gene3D G3DSA:2.40.10.10 - 36 257 8.8E-61
8 g2833.t3 Gene3D G3DSA:2.40.10.10 - 39 264 8.8E-61
2 g2833.t3 PANTHER PTHR24276 POLYSERASE-RELATED 21 269 2.9E-60
5 g2833.t3 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 61 76 6.1E-11
3 g2833.t3 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 123 137 6.1E-11
4 g2833.t3 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 217 229 6.1E-11
1 g2833.t3 Pfam PF00089 Trypsin 27 263 5.2E-52
11 g2833.t3 Phobius SIGNAL_PEPTIDE Signal peptide region 1 20 -
12 g2833.t3 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 4 -
13 g2833.t3 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 5 15 -
14 g2833.t3 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 16 20 -
10 g2833.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 21 297 -
17 g2833.t3 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 71 76 -
18 g2833.t3 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 26 268 29.403
16 g2833.t3 SMART SM00020 trypsin_2 25 263 6.0E-70
6 g2833.t3 SUPERFAMILY SSF50494 Trypsin-like serine proteases 17 265 1.34E-66
7 g2833.t3 SignalP_EUK SignalP-noTM SignalP-noTM 1 20 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values