Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Trypsin eta.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2833 g2833.t4 TTS g2833.t4 20496868 20496868
chr_3 g2833 g2833.t4 isoform g2833.t4 20496981 20498180
chr_3 g2833 g2833.t4 exon g2833.t4.exon1 20496981 20497377
chr_3 g2833 g2833.t4 cds g2833.t4.CDS1 20496981 20497377
chr_3 g2833 g2833.t4 exon g2833.t4.exon2 20497446 20497725
chr_3 g2833 g2833.t4 cds g2833.t4.CDS2 20497446 20497725
chr_3 g2833 g2833.t4 exon g2833.t4.exon3 20497791 20498180
chr_3 g2833 g2833.t4 cds g2833.t4.CDS3 20497791 20498007
chr_3 g2833 g2833.t4 TSS g2833.t4 20498309 20498309

Sequences

>g2833.t4 Gene=g2833 Length=1067
ATGCTCAATTATATTTATTTGATGGGTAGTTTTTGTAAAGTTCGTCATTGCTTCTTTTCA
CTGATTTTTTTCTCTTATCATCAATTCATTTAGATAAGGGAAATATATTTATTACCTTGC
TTTTTTCCACACAATTGTCAGTCATTAATTTACTTTTAAACACTGCTGAAAGCATGAATA
GTGAGATTATTTTGCAAGTTATTTTATTTTTCTTTATTGCATTTTCTAATGCACAAAATA
GTCCAAAAATTATCGGCGGTTTTAATGTCTCGTCAATTGAAGGTTTTGAATATCAAGTTT
CATTAAGAGATGCATCTTATGAATCATCAAAATTTGGAAGCGGACACATTTGTGGTGGTA
GTTTGATAGATTACAACAAAGTAAGCACAACATCACATTGTGTACACAACGGAAGAAAAT
TCTTGGCAGCACATTATTTTGTTGCTGTAATGGGAAATTTAGATCTATTTGATCGAAATG
TAAATACAGTAGTACGACGAATTAAGAAAATTATTGGTCATCCCAATTACAATGCTGACA
CATTTGAAAATGACATTGCAGTACTCATTTTAAATGATCTTATACCTGTGAATCATCCTA
CAGCTAAACCTATTCCTCTCTCAAATTTTGAAGCGCGTGCCGGTCAAAATTGTACAACTG
CTGGATGGGGAACAATCGAATATGATGAAAATGCGAGTGCTGTAAGATGGTTAATGGCTG
TAAACTTAAATGTAAATTTAAGAGCAGCTTGCAATAAACCGTCGAGTCATGCTGGGAGTG
TTCAAAAGGGGATGTTTTGTGCTGGACCATTTGAAGGTGGAAAAGACACATGTCAGGGTG
ATAGCGGTGGCGGCTTTGTTTGTAAAGGAGTTTTAGTAGGTGTGACTTCTCATGGCTTTG
AATGCGGACTACCAAATTATCCAGGAATTTATATGGATGTCTCTTATTATCGAAAATGGA
TCGAAACAGAAGGCAGAAGCAGTAGCAACGATGCCGGTTCAGTTTGGTCAAATGTCAAAA
ATTATCTTTACTCTATGTCTGTTGCTGTGACTATGTTCATAAAATAA

>g2833.t4 Gene=g2833 Length=297
MNSEIILQVILFFFIAFSNAQNSPKIIGGFNVSSIEGFEYQVSLRDASYESSKFGSGHIC
GGSLIDYNKVSTTSHCVHNGRKFLAAHYFVAVMGNLDLFDRNVNTVVRRIKKIIGHPNYN
ADTFENDIAVLILNDLIPVNHPTAKPIPLSNFEARAGQNCTTAGWGTIEYDENASAVRWL
MAVNLNVNLRAACNKPSSHAGSVQKGMFCAGPFEGGKDTCQGDSGGGFVCKGVLVGVTSH
GFECGLPNYPGIYMDVSYYRKWIETEGRSSSNDAGSVWSNVKNYLYSMSVAVTMFIK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g2833.t4 CDD cd00190 Tryp_SPc 26 264 4.00237E-73
9 g2833.t4 Gene3D G3DSA:2.40.10.10 - 36 257 3.1E-58
8 g2833.t4 Gene3D G3DSA:2.40.10.10 - 39 264 3.1E-58
2 g2833.t4 PANTHER PTHR24276 POLYSERASE-RELATED 21 269 8.5E-58
5 g2833.t4 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 61 76 2.3E-9
3 g2833.t4 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 123 137 2.3E-9
4 g2833.t4 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 217 229 2.3E-9
1 g2833.t4 Pfam PF00089 Trypsin 27 263 2.3E-49
11 g2833.t4 Phobius SIGNAL_PEPTIDE Signal peptide region 1 20 -
12 g2833.t4 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 4 -
13 g2833.t4 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 5 15 -
14 g2833.t4 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 16 20 -
10 g2833.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 21 297 -
17 g2833.t4 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 26 268 28.517
16 g2833.t4 SMART SM00020 trypsin_2 25 263 8.6E-65
6 g2833.t4 SUPERFAMILY SSF50494 Trypsin-like serine proteases 17 265 1.89E-63
7 g2833.t4 SignalP_EUK SignalP-noTM SignalP-noTM 1 20 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed