Gene loci information

Transcript annotation

  • This transcript has been annotated as Apyrase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2835 g2835.t1 TTS g2835.t1 20500351 20500351
chr_3 g2835 g2835.t1 isoform g2835.t1 20500421 20502281
chr_3 g2835 g2835.t1 exon g2835.t1.exon1 20500421 20501313
chr_3 g2835 g2835.t1 cds g2835.t1.CDS1 20500421 20501313
chr_3 g2835 g2835.t1 exon g2835.t1.exon2 20501379 20501774
chr_3 g2835 g2835.t1 cds g2835.t1.CDS2 20501379 20501774
chr_3 g2835 g2835.t1 exon g2835.t1.exon3 20501830 20502074
chr_3 g2835 g2835.t1 cds g2835.t1.CDS3 20501830 20502074
chr_3 g2835 g2835.t1 exon g2835.t1.exon4 20502142 20502281
chr_3 g2835 g2835.t1 cds g2835.t1.CDS4 20502142 20502281
chr_3 g2835 g2835.t1 TSS g2835.t1 20502370 20502370

Sequences

>g2835.t1 Gene=g2835 Length=1674
ATGAAATTTATATTATGTTCGACAATTTTCATTCTTTATATTGGTTCTTGGATAATTTCA
AGTGAATCTGCTGCAGTTATTAAGAAAAATGAAAATCTTTTTCCACTTTCAATAATTCAT
GTTAATGATATTCATGCAAAATTTGATGAAACTAATGTCGATAGTACAAGTTGCAAGGAA
AAATTAGGACAAGTATGCATAGGAGGATTTGCTCGTGTTATGACAATGGTTAAGAAACTT
AAAGCTGAAAGAGAGGCACAAAACAAAAATCCAATTTTTTTGAACATTGGTGATAATTTC
GTTGGAACTTTATGGTATGAATTATTTGGATGGAATATTACATCAACTTTCTTAAACATT
CTTCCTGCAGACGCTACCACTTTAGGAAATCATGAATTCGATAGAGGTGTACCTGAGGTT
GTGCATTTTCTTGAACATTTAATTTCGCCTGTAGTTGTTGCAAATTTAGATGATAAAGAT
GAACCAGATATGGCGAATAAATATAAAAAGTCAATTATTATCGAACGAGCAGGTAGAAAG
ATTGGTTTAATTGGAGCACTTGTGGTTGCAACTTTGGAAATTTCGAGTCCAGGAAATTTA
AAAATTCTAGATGAAATTGAATCTGTCAAACAGGAAGCAGCAAGATTAAAAAGAGAAGAT
GACGTTGATATTATTATTGTTTTGTCACATTGTGGCCTTGTAATTGATCGTGAAATGGCA
CAAAGTGGTGATGAAATAGATATTATTGTAGGTGGACATAGTCATTCTCTTCTTTATACA
GGTGATAATGTTCCCGGACCAGATGTTCCCGCAGATAAATATCCAATTGAATACAAACAT
GAAAGCGGACATAAAACAATTATCGTACAAGCTTCAGCTTATACAAAATATCTCGGTGAT
TTAACAGTTTATTTTGATGAGAACGGAGAAATTGAGACATATGAAGGAAATACAATTTTC
TTAGAAACAAGCATTGAACCTGATCCTGAAATTGTTGAACAATTAGCACCATGGAAAGCT
GCAGTCGATGCAATTGGACAAAGAAAAGTCGGTGATATCAAATCGATGCTGTATCAAAAA
GATTGCGCTTTCGGAGAATGTAATATTGGCGATTTTGTGTGTGATGCTTTTATTAATTAC
ATCGTGACACATGAAGATTATCAAGTTAATGATGGATGGGCATATGCAGCTATTGCAATT
ATTAATGCTGGTAGTATTCGCAATAATTTACCACCAGGTGAATTAATCTTTGATGATCTT
TTCACTACAATTCCATTTATCAACACACTCGATGTTTTTGAGTTGCTTGGTCAAGACTTG
TTGGATGCACTTCAATTCTCTGGTAATGCTTATAGATATTACAACTTTTTGCAATTTTCT
GGATTAAAAGTAACATACAACATTTCAATGCCAATGAATCAGCGAGTTATTTCAGTAGAT
GTTTTATGTCGAGAATGTGAAATTCCAAAATATGAGAAATTGGATGTAACAAAATATTAT
CGTTTAATTATTTCAAGTTTTTTCGGTGATGGTGGAAATGGATATTTGATGTTTAAAAAC
AAAAGAAATACCCGCACAACTAAAGAAAAAGATATTGAAATTATAGAGCAATATTTCAAA
AAGATGAGTCCCGTATTGCAGAAAAAGGATGGAAGAATAAAAGTTTTAACTTGA

>g2835.t1 Gene=g2835 Length=557
MKFILCSTIFILYIGSWIISSESAAVIKKNENLFPLSIIHVNDIHAKFDETNVDSTSCKE
KLGQVCIGGFARVMTMVKKLKAEREAQNKNPIFLNIGDNFVGTLWYELFGWNITSTFLNI
LPADATTLGNHEFDRGVPEVVHFLEHLISPVVVANLDDKDEPDMANKYKKSIIIERAGRK
IGLIGALVVATLEISSPGNLKILDEIESVKQEAARLKREDDVDIIIVLSHCGLVIDREMA
QSGDEIDIIVGGHSHSLLYTGDNVPGPDVPADKYPIEYKHESGHKTIIVQASAYTKYLGD
LTVYFDENGEIETYEGNTIFLETSIEPDPEIVEQLAPWKAAVDAIGQRKVGDIKSMLYQK
DCAFGECNIGDFVCDAFINYIVTHEDYQVNDGWAYAAIAIINAGSIRNNLPPGELIFDDL
FTTIPFINTLDVFELLGQDLLDALQFSGNAYRYYNFLQFSGLKVTYNISMPMNQRVISVD
VLCRECEIPKYEKLDVTKYYRLIISSFFGDGGNGYLMFKNKRNTRTTKEKDIEIIEQYFK
KMSPVLQKKDGRIKVLT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
22 g2835.t1 CDD cd07409 MPP_CD73_N 36 321 1.98036E-136
16 g2835.t1 Coils Coil Coil 199 219 -
14 g2835.t1 Gene3D G3DSA:3.60.21.10 - 27 355 5.9E-91
15 g2835.t1 Gene3D G3DSA:3.90.780.10 - 356 556 1.2E-50
3 g2835.t1 PANTHER PTHR11575 5’-NUCLEOTIDASE-RELATED 22 555 1.8E-197
4 g2835.t1 PANTHER PTHR11575:SF32 APYRASE-LIKE PROTEIN 22 555 1.8E-197
6 g2835.t1 PRINTS PR01607 Apyrase family signature 34 52 7.0E-32
10 g2835.t1 PRINTS PR01607 Apyrase family signature 220 237 7.0E-32
5 g2835.t1 PRINTS PR01607 Apyrase family signature 239 262 7.0E-32
7 g2835.t1 PRINTS PR01607 Apyrase family signature 286 306 7.0E-32
9 g2835.t1 PRINTS PR01607 Apyrase family signature 414 437 7.0E-32
8 g2835.t1 PRINTS PR01607 Apyrase family signature 493 512 7.0E-32
2 g2835.t1 Pfam PF00149 Calcineurin-like phosphoesterase 37 256 1.4E-11
1 g2835.t1 Pfam PF02872 5’-nucleotidase, C-terminal domain 350 519 8.0E-33
18 g2835.t1 Phobius SIGNAL_PEPTIDE Signal peptide region 1 24 -
19 g2835.t1 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
20 g2835.t1 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 14 -
21 g2835.t1 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 15 24 -
17 g2835.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 25 557 -
12 g2835.t1 SUPERFAMILY SSF56300 Metallo-dependent phosphatases 32 345 1.83E-81
11 g2835.t1 SUPERFAMILY SSF55816 5’-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 348 556 3.79E-47
13 g2835.t1 SignalP_EUK SignalP-noTM SignalP-noTM 1 23 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016787 hydrolase activity MF
GO:0009166 nucleotide catabolic process BP

KEGG

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values