Gene loci information

Transcript annotation

  • This transcript has been annotated as Apyrase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2835 g2835.t7 TTS g2835.t7 20500351 20500351
chr_3 g2835 g2835.t7 isoform g2835.t7 20500421 20502281
chr_3 g2835 g2835.t7 exon g2835.t7.exon1 20500421 20501313
chr_3 g2835 g2835.t7 cds g2835.t7.CDS1 20500421 20501313
chr_3 g2835 g2835.t7 exon g2835.t7.exon2 20501379 20501636
chr_3 g2835 g2835.t7 cds g2835.t7.CDS2 20501379 20501636
chr_3 g2835 g2835.t7 exon g2835.t7.exon3 20501830 20502074
chr_3 g2835 g2835.t7 cds g2835.t7.CDS3 20501830 20502074
chr_3 g2835 g2835.t7 exon g2835.t7.exon4 20502142 20502281
chr_3 g2835 g2835.t7 cds g2835.t7.CDS4 20502142 20502281
chr_3 g2835 g2835.t7 TSS g2835.t7 20502370 20502370

Sequences

>g2835.t7 Gene=g2835 Length=1536
ATGAAATTTATATTATGTTCGACAATTTTCATTCTTTATATTGGTTCTTGGATAATTTCA
AGTGAATCTGCTGCAGTTATTAAGAAAAATGAAAATCTTTTTCCACTTTCAATAATTCAT
GTTAATGATATTCATGCAAAATTTGATGAAACTAATGTCGATAGTACAAGTTGCAAGGAA
AAATTAGGACAAGTATGCATAGGAGGATTTGCTCGTGTTATGACAATGGTTAAGAAACTT
AAAGCTGAAAGAGAGGCACAAAACAAAAATCCAATTTTTTTGAACATTGGTGATAATTTC
GTTGGAACTTTATGGTATGAATTATTTGGATGGAATATTACATCAACTTTCTTAAACATT
CTTCCTGCAGACGCTACCACTTTAGAACGAGCAGGTAGAAAGATTGGTTTAATTGGAGCA
CTTGTGGTTGCAACTTTGGAAATTTCGAGTCCAGGAAATTTAAAAATTCTAGATGAAATT
GAATCTGTCAAACAGGAAGCAGCAAGATTAAAAAGAGAAGATGACGTTGATATTATTATT
GTTTTGTCACATTGTGGCCTTGTAATTGATCGTGAAATGGCACAAAGTGGTGATGAAATA
GATATTATTGTAGGTGGACATAGTCATTCTCTTCTTTATACAGGTGATAATGTTCCCGGA
CCAGATGTTCCCGCAGATAAATATCCAATTGAATACAAACATGAAAGCGGACATAAAACA
ATTATCGTACAAGCTTCAGCTTATACAAAATATCTCGGTGATTTAACAGTTTATTTTGAT
GAGAACGGAGAAATTGAGACATATGAAGGAAATACAATTTTCTTAGAAACAAGCATTGAA
CCTGATCCTGAAATTGTTGAACAATTAGCACCATGGAAAGCTGCAGTCGATGCAATTGGA
CAAAGAAAAGTCGGTGATATCAAATCGATGCTGTATCAAAAAGATTGCGCTTTCGGAGAA
TGTAATATTGGCGATTTTGTGTGTGATGCTTTTATTAATTACATCGTGACACATGAAGAT
TATCAAGTTAATGATGGATGGGCATATGCAGCTATTGCAATTATTAATGCTGGTAGTATT
CGCAATAATTTACCACCAGGTGAATTAATCTTTGATGATCTTTTCACTACAATTCCATTT
ATCAACACACTCGATGTTTTTGAGTTGCTTGGTCAAGACTTGTTGGATGCACTTCAATTC
TCTGGTAATGCTTATAGATATTACAACTTTTTGCAATTTTCTGGATTAAAAGTAACATAC
AACATTTCAATGCCAATGAATCAGCGAGTTATTTCAGTAGATGTTTTATGTCGAGAATGT
GAAATTCCAAAATATGAGAAATTGGATGTAACAAAATATTATCGTTTAATTATTTCAAGT
TTTTTCGGTGATGGTGGAAATGGATATTTGATGTTTAAAAACAAAAGAAATACCCGCACA
ACTAAAGAAAAAGATATTGAAATTATAGAGCAATATTTCAAAAAGATGAGTCCCGTATTG
CAGAAAAAGGATGGAAGAATAAAAGTTTTAACTTGA

>g2835.t7 Gene=g2835 Length=511
MKFILCSTIFILYIGSWIISSESAAVIKKNENLFPLSIIHVNDIHAKFDETNVDSTSCKE
KLGQVCIGGFARVMTMVKKLKAEREAQNKNPIFLNIGDNFVGTLWYELFGWNITSTFLNI
LPADATTLERAGRKIGLIGALVVATLEISSPGNLKILDEIESVKQEAARLKREDDVDIII
VLSHCGLVIDREMAQSGDEIDIIVGGHSHSLLYTGDNVPGPDVPADKYPIEYKHESGHKT
IIVQASAYTKYLGDLTVYFDENGEIETYEGNTIFLETSIEPDPEIVEQLAPWKAAVDAIG
QRKVGDIKSMLYQKDCAFGECNIGDFVCDAFINYIVTHEDYQVNDGWAYAAIAIINAGSI
RNNLPPGELIFDDLFTTIPFINTLDVFELLGQDLLDALQFSGNAYRYYNFLQFSGLKVTY
NISMPMNQRVISVDVLCRECEIPKYEKLDVTKYYRLIISSFFGDGGNGYLMFKNKRNTRT
TKEKDIEIIEQYFKKMSPVLQKKDGRIKVLT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
18 g2835.t7 Coils Coil Coil 153 173 -
15 g2835.t7 Gene3D G3DSA:3.60.21.10 - 27 126 1.4E-21
16 g2835.t7 Gene3D G3DSA:3.60.21.10 - 127 300 6.4E-48
17 g2835.t7 Gene3D G3DSA:3.90.780.10 - 306 510 9.6E-51
3 g2835.t7 PANTHER PTHR11575 5’-NUCLEOTIDASE-RELATED 22 128 2.1E-170
5 g2835.t7 PANTHER PTHR11575:SF32 APYRASE-LIKE PROTEIN 22 128 2.1E-170
2 g2835.t7 PANTHER PTHR11575 5’-NUCLEOTIDASE-RELATED 127 509 2.1E-170
4 g2835.t7 PANTHER PTHR11575:SF32 APYRASE-LIKE PROTEIN 127 509 2.1E-170
7 g2835.t7 PRINTS PR01607 Apyrase family signature 34 52 4.4E-32
11 g2835.t7 PRINTS PR01607 Apyrase family signature 174 191 4.4E-32
9 g2835.t7 PRINTS PR01607 Apyrase family signature 193 216 4.4E-32
6 g2835.t7 PRINTS PR01607 Apyrase family signature 240 260 4.4E-32
8 g2835.t7 PRINTS PR01607 Apyrase family signature 368 391 4.4E-32
10 g2835.t7 PRINTS PR01607 Apyrase family signature 447 466 4.4E-32
1 g2835.t7 Pfam PF02872 5’-nucleotidase, C-terminal domain 304 473 6.7E-33
20 g2835.t7 Phobius SIGNAL_PEPTIDE Signal peptide region 1 24 -
21 g2835.t7 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
22 g2835.t7 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 14 -
23 g2835.t7 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 15 24 -
19 g2835.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 25 511 -
13 g2835.t7 SUPERFAMILY SSF56300 Metallo-dependent phosphatases 32 299 2.17E-62
12 g2835.t7 SUPERFAMILY SSF55816 5’-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 302 510 3.14E-47
14 g2835.t7 SignalP_EUK SignalP-noTM SignalP-noTM 1 23 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016787 hydrolase activity MF
GO:0009166 nucleotide catabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed