General information for g2837.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Signal recognition particle receptor subunit alpha-like protein.
Parent gene
- The parent gene g2837 is located on chr_3: 20506376..20507239 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2837 | g2837.t8 | isoform | g2837.t8 | 20505672 | 20506376 |
| chr_3 | g2837 | g2837.t8 | exon | g2837.t8.exon1 | 20505672 | 20506191 |
| chr_3 | g2837 | g2837.t8 | cds | g2837.t8.CDS1 | 20505859 | 20506191 |
| chr_3 | g2837 | g2837.t8 | exon | g2837.t8.exon2 | 20506251 | 20506376 |
| chr_3 | g2837 | g2837.t8 | cds | g2837.t8.CDS2 | 20506251 | 20506376 |
| chr_3 | g2837 | g2837.t8 | TTS | g2837.t8 | 20506475 | 20506475 |
| chr_3 | g2837 | g2837.t8 | TSS | g2837.t8 | NA | NA |
Sequences
>g2837.t8 Gene=g2837 Length=646
GTGTGGTGTCAATGGTGTAGGCAAATCAACAAATTTGGCAAAAATCTGTTTCTGGTTGAT
TGAGAATAACTTCAATGTATTGATTGCAGCTTGTGACACTTTTCGTGCGGGTGCTGTTGA
ACAGTTGCGCACACATACTCGTCATTTGAATGCACTTCATCCAAAAGAAAAGCATGGAGG
TCGTGAGATGGTTGAGTTATATGAAAAAGGATATGGCAAAGATGCAGCAGGAATAGCAAT
GGAAGCGATTCGTTATGCTAAAGAAGCAGGAATTGATGTTGTTCTTGTTGATACTGCTGG
TCGAATGCAAGACAATGAACCTTTGATGCGCGCACTTGCTAAACTGATCAAAATTAATGA
GCCTGATTTGGTATTATTCGTTGGTGAGGCTCTTGTTGGAAATGAAGCTGTCGATCAATT
GGTGAAATTTAATCAAGCTCTTGCTGATCATTCTTCAATGGAAAATCCTCATGTTATTGA
TGGAATCGTTTTAACTAAATTTGACACTATTGATGATAAGGTTGGTGCCGCAATTTCAAT
GACATACATCACAGGTCAACCAATTGTTTTCGTTGGTACTGGTCAAACGTATACCGATTT
AAAGGCTTTAAATGCACGTGCCGTTGTTCATGCACTCATGAAATAA
>g2837.t8 Gene=g2837 Length=152
MVELYEKGYGKDAAGIAMEAIRYAKEAGIDVVLVDTAGRMQDNEPLMRALAKLIKINEPD
LVLFVGEALVGNEAVDQLVKFNQALADHSSMENPHVIDGIVLTKFDTIDDKVGAAISMTY
ITGQPIVFVGTGQTYTDLKALNARAVVHALMK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g2837.t8 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 152 | 1.6E-57 |
| 2 | g2837.t8 | PANTHER | PTHR43134:SF1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA | 2 | 152 | 1.8E-89 |
| 3 | g2837.t8 | PANTHER | PTHR43134 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA | 2 | 152 | 1.8E-89 |
| 1 | g2837.t8 | Pfam | PF00448 | SRP54-type protein, GTPase domain | 2 | 151 | 1.2E-31 |
| 6 | g2837.t8 | ProSitePatterns | PS00300 | SRP54-type proteins GTP-binding domain signature. | 125 | 138 | - |
| 5 | g2837.t8 | SMART | SM00962 | SRP54_3 | 1 | 152 | 4.5E-24 |
| 4 | g2837.t8 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 4 | 151 | 1.25E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | BP |
| GO:0005525 | GTP binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
