General information for g2841.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2841 is located on chr_3: 20510084..20511806 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2841 | g2841.t1 | TTS | g2841.t1 | 20509304 | 20509304 |
| chr_3 | g2841 | g2841.t1 | isoform | g2841.t1 | 20509404 | 20510888 |
| chr_3 | g2841 | g2841.t1 | exon | g2841.t1.exon1 | 20509404 | 20510888 |
| chr_3 | g2841 | g2841.t1 | cds | g2841.t1.CDS1 | 20509404 | 20510888 |
| chr_3 | g2841 | g2841.t1 | TSS | g2841.t1 | 20511152 | 20511152 |
Sequences
>g2841.t1 Gene=g2841 Length=1485
ATGGATCCTAATTCACATGTTATCAATCGTGAAAATAATGAAGAAGAAGAAGTGCAAGAC
GATGATGTTGACCTAATTCTTTCGAGACCCAGTGAACAACCAAAAAGATATTTTCTGGAA
TGTGCTTTAGTTCTTTTATTCTTCGGCAACAATTTAATATCAACTTTACTTACTAATCAA
ATGTTAAAACAAGCCTGTCTGCAATTTAACTATAATACATCAGTCTGTGATAATCTGAAC
CAAAATGAGAGTGATAGCACATCAAAAGAAATTGAGAAAGAAGTTCAACCATACATTGCA
AACATTAACATGGTCACTAGCATAATACATACAGTAATTCCAGCAATCCTATCATTGTTT
CTTGGACCATTCAGTGACACTTATGGTAGAAAGCCAATACTTAATTCAACATTTATGGGC
TACGCTTTAACACTTATAGCATTTGCAAGTGTCTGCTTCTATTCTGAATACATTCAACCG
ATTTCACCGTGGATATATGCTCTATGTTACATCCCAGAAACTCTTTTTGGTGGTTGGCCA
TCACTTCTTACAGCCACGTTATGCTATGTAACAGATACAACAGAAGAAACAAAAAGACCT
TTTCGATTACTGATAATTGAACTTATCATTTTTATCGGTGTCTTGCTTGGGAACTTATTA
TGTTCAATAATATTATCAGCTACAAATGCTTTCATGGTGTTTGCAATTTCAGCTACTTGT
GGATTTTTTGCTACAATCTTTATCATATTTCTAGTTGATGAATCAGTCAACGCACCGCAA
CAAGCACATTTATATGAAAAATTAACACATCTCTTATCACCAGTTTATATTATTGACATG
ATTAAGACCTGTTTCAAAAGAAGGCCATTTAAGGAAAGGAAAATTCTATTAAGTCTAATA
ACAATTTTAATGCTATCGGTTTTCGCATTTAGTGGAAATTCAACAATCGGATATTTGTTT
GAGCGATTAAAGTTCAGTTGGACTTTGAAAGATCACAATTACTATAGCTCATACAATATT
ATAATCACAATTTTTGGTTCAGTCCTTGGTTTTGGTATTCTGAAAAAAATATTTAAGCTT
AGTGACATGACATTGACATGCATCGCATTATTGAGTGGACTTGCTGATTCAGGACTAAAA
GCATTTGCTACTTACCCTTGGCATTTCTATTTGATTTCTTCTTTAACATTATTCAGAATT
CTCAGTTCTCCTATGTGTCGATCATTAATATCTAATATAATTCCTCAAAATGAAATTGGA
AAGATCTTTTCTATAACTACATCATTTGAAGCATTATCAGATTTAGTGGCAGCACCTCTT
TATACTTATGTCTATAATTCAACATACCAAACTTTTCCAGGTGCCTTTTTCTTAATAACA
GCAGGTGTATGTGTCATTAATGTAGGTTTAGCATTTTATACAATAGCAATGAAAAGGATT
CGTGAAACATTAATTAATCCTTACACTATGATTGAAGATAATTAA
>g2841.t1 Gene=g2841 Length=494
MDPNSHVINRENNEEEEVQDDDVDLILSRPSEQPKRYFLECALVLLFFGNNLISTLLTNQ
MLKQACLQFNYNTSVCDNLNQNESDSTSKEIEKEVQPYIANINMVTSIIHTVIPAILSLF
LGPFSDTYGRKPILNSTFMGYALTLIAFASVCFYSEYIQPISPWIYALCYIPETLFGGWP
SLLTATLCYVTDTTEETKRPFRLLIIELIIFIGVLLGNLLCSIILSATNAFMVFAISATC
GFFATIFIIFLVDESVNAPQQAHLYEKLTHLLSPVYIIDMIKTCFKRRPFKERKILLSLI
TILMLSVFAFSGNSTIGYLFERLKFSWTLKDHNYYSSYNIIITIFGSVLGFGILKKIFKL
SDMTLTCIALLSGLADSGLKAFATYPWHFYLISSLTLFRILSSPMCRSLISNIIPQNEIG
KIFSITTSFEALSDLVAAPLYTYVYNSTYQTFPGAFFLITAGVCVINVGLAFYTIAMKRI
RETLINPYTMIEDN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g2841.t1 | Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 95 | 473 | 6.3E-34 |
| 13 | g2841.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - |
| 2 | g2841.t1 | PANTHER | PTHR23507 | ZGC:174356 | 33 | 472 | 1.7E-86 |
| 3 | g2841.t1 | PANTHER | PTHR23507:SF1 | ZGC:174356 | 33 | 472 | 1.7E-86 |
| 1 | g2841.t1 | Pfam | PF07690 | Major Facilitator Superfamily | 41 | 437 | 2.9E-24 |
| 20 | g2841.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 36 | - |
| 31 | g2841.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 37 | 57 | - |
| 25 | g2841.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 58 | 97 | - |
| 30 | g2841.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 98 | 121 | - |
| 15 | g2841.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 122 | 132 | - |
| 38 | g2841.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 133 | 158 | - |
| 27 | g2841.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 159 | 163 | - |
| 36 | g2841.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 164 | 191 | - |
| 19 | g2841.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 192 | 202 | - |
| 39 | g2841.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 203 | 225 | - |
| 22 | g2841.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 226 | 230 | - |
| 33 | g2841.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 231 | 252 | - |
| 21 | g2841.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 253 | 294 | - |
| 35 | g2841.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 295 | 320 | - |
| 23 | g2841.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 321 | 334 | - |
| 28 | g2841.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 335 | 354 | - |
| 17 | g2841.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 355 | 362 | - |
| 37 | g2841.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 363 | 383 | - |
| 26 | g2841.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 384 | 388 | - |
| 32 | g2841.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 389 | 410 | - |
| 18 | g2841.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 411 | 421 | - |
| 34 | g2841.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 422 | 443 | - |
| 24 | g2841.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 444 | 454 | - |
| 29 | g2841.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 455 | 476 | - |
| 16 | g2841.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 477 | 494 | - |
| 12 | g2841.t1 | SUPERFAMILY | SSF103473 | MFS general substrate transporter | 107 | 475 | 4.97E-32 |
| 9 | g2841.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 99 | 121 | - |
| 4 | g2841.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 136 | 158 | - |
| 10 | g2841.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 203 | 225 | - |
| 11 | g2841.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 230 | 252 | - |
| 8 | g2841.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 295 | 317 | - |
| 7 | g2841.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 332 | 354 | - |
| 6 | g2841.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 367 | 389 | - |
| 5 | g2841.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 454 | 476 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0022857 | transmembrane transporter activity | MF |
KEGG
Orthology
- This transcript has been annotated with K14613 (MFS transporter, PCFT/HCP family, solute carrier family 46 (folate transporter), member 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
