Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2841 g2841.t2 TTS g2841.t2 20509304 20509304
chr_3 g2841 g2841.t2 isoform g2841.t2 20510084 20510888
chr_3 g2841 g2841.t2 exon g2841.t2.exon1 20510084 20510134
chr_3 g2841 g2841.t2 cds g2841.t2.CDS1 20510084 20510134
chr_3 g2841 g2841.t2 exon g2841.t2.exon2 20510193 20510888
chr_3 g2841 g2841.t2 cds g2841.t2.CDS2 20510193 20510888
chr_3 g2841 g2841.t2 TSS g2841.t2 20511152 20511152

Sequences

>g2841.t2 Gene=g2841 Length=747
ATGGATCCTAATTCACATGTTATCAATCGTGAAAATAATGAAGAAGAAGAAGTGCAAGAC
GATGATGTTGACCTAATTCTTTCGAGACCCAGTGAACAACCAAAAAGATATTTTCTGGAA
TGTGCTTTAGTTCTTTTATTCTTCGGCAACAATTTAATATCAACTTTACTTACTAATCAA
ATGTTAAAACAAGCCTGTCTGCAATTTAACTATAATACATCAGTCTGTGATAATCTGAAC
CAAAATGAGAGTGATAGCACATCAAAAGAAATTGAGAAAGAAGTTCAACCATACATTGCA
AACATTAACATGGTCACTAGCATAATACATACAGTAATTCCAGCAATCCTATCATTGTTT
CTTGGACCATTCAGTGACACTTATGGTAGAAAGCCAATACTTAATTCAACATTTATGGGC
TACGCTTTAACACTTATAGCATTTGCAAGTGTCTGCTTCTATTCTGAATACATTCAACCG
ATTTCACCGTGGATATATGCTCTATGTTACATCCCAGAAACTCTTTTTGGTGGTTGGCCA
TCACTTCTTACAGCCACGTTATGCTATGTAACAGATACAACAGAAGAAACAAAAAGACCT
TTTCGATTACTGATAATTGAACTTATCATTTTTATCGGTGTCTTGCTTGGGAACTTATTA
TGTTCAATAATATTATCAGCTACAAATGCTTTCATGTTGATGAATCAGTCAACGCACCGC
AACAAGCACATTTATATGAAAAATTAA

>g2841.t2 Gene=g2841 Length=248
MDPNSHVINRENNEEEEVQDDDVDLILSRPSEQPKRYFLECALVLLFFGNNLISTLLTNQ
MLKQACLQFNYNTSVCDNLNQNESDSTSKEIEKEVQPYIANINMVTSIIHTVIPAILSLF
LGPFSDTYGRKPILNSTFMGYALTLIAFASVCFYSEYIQPISPWIYALCYIPETLFGGWP
SLLTATLCYVTDTTEETKRPFRLLIIELIIFIGVLLGNLLCSIILSATNAFMLMNQSTHR
NKHIYMKN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g2841.t2 Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains 43 234 9.9E-12
9 g2841.t2 MobiDBLite mobidb-lite consensus disorder prediction 1 21 -
2 g2841.t2 PANTHER PTHR23507 ZGC:174356 33 229 1.3E-36
3 g2841.t2 PANTHER PTHR23507:SF1 ZGC:174356 33 229 1.3E-36
1 g2841.t2 Pfam PF07690 Major Facilitator Superfamily 41 228 5.0E-12
13 g2841.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 36 -
18 g2841.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 37 57 -
15 g2841.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 58 97 -
17 g2841.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 98 121 -
11 g2841.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 122 132 -
20 g2841.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 133 158 -
16 g2841.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 159 163 -
19 g2841.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 164 191 -
12 g2841.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 192 202 -
21 g2841.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 203 225 -
14 g2841.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 226 248 -
8 g2841.t2 SUPERFAMILY SSF103473 MFS general substrate transporter 106 229 2.35E-13
4 g2841.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 100 122 -
5 g2841.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 132 154 -
7 g2841.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 161 183 -
6 g2841.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 203 225 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055085 transmembrane transport BP
GO:0022857 transmembrane transporter activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values