Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2841 g2841.t4 TTS g2841.t4 20509304 20509304
chr_3 g2841 g2841.t4 isoform g2841.t4 20509404 20510888
chr_3 g2841 g2841.t4 exon g2841.t4.exon1 20509404 20510639
chr_3 g2841 g2841.t4 cds g2841.t4.CDS1 20509404 20510579
chr_3 g2841 g2841.t4 exon g2841.t4.exon2 20510768 20510888
chr_3 g2841 g2841.t4 TSS g2841.t4 20511152 20511152

Sequences

>g2841.t4 Gene=g2841 Length=1357
ATGGATCCTAATTCACATGTTATCAATCGTGAAAATAATGAAGAAGAAGAAGTGCAAGAC
GATGATGTTGACCTAATTCTTTCGAGACCCAGTGAACAACCAAAAAGATATTTTCTGGAA
TAGTGATAGCACATCAAAAGAAATTGAGAAAGAAGTTCAACCATACATTGCAAACATTAA
CATGGTCACTAGCATAATACATACAGTAATTCCAGCAATCCTATCATTGTTTCTTGGACC
ATTCAGTGACACTTATGGTAGAAAGCCAATACTTAATTCAACATTTATGGGCTACGCTTT
AACACTTATAGCATTTGCAAGTGTCTGCTTCTATTCTGAATACATTCAACCGATTTCACC
GTGGATATATGCTCTATGTTACATCCCAGAAACTCTTTTTGGTGGTTGGCCATCACTTCT
TACAGCCACGTTATGCTATGTAACAGATACAACAGAAGAAACAAAAAGACCTTTTCGATT
ACTGATAATTGAACTTATCATTTTTATCGGTGTCTTGCTTGGGAACTTATTATGTTCAAT
AATATTATCAGCTACAAATGCTTTCATGGTGTTTGCAATTTCAGCTACTTGTGGATTTTT
TGCTACAATCTTTATCATATTTCTAGTTGATGAATCAGTCAACGCACCGCAACAAGCACA
TTTATATGAAAAATTAACACATCTCTTATCACCAGTTTATATTATTGACATGATTAAGAC
CTGTTTCAAAAGAAGGCCATTTAAGGAAAGGAAAATTCTATTAAGTCTAATAACAATTTT
AATGCTATCGGTTTTCGCATTTAGTGGAAATTCAACAATCGGATATTTGTTTGAGCGATT
AAAGTTCAGTTGGACTTTGAAAGATCACAATTACTATAGCTCATACAATATTATAATCAC
AATTTTTGGTTCAGTCCTTGGTTTTGGTATTCTGAAAAAAATATTTAAGCTTAGTGACAT
GACATTGACATGCATCGCATTATTGAGTGGACTTGCTGATTCAGGACTAAAAGCATTTGC
TACTTACCCTTGGCATTTCTATTTGATTTCTTCTTTAACATTATTCAGAATTCTCAGTTC
TCCTATGTGTCGATCATTAATATCTAATATAATTCCTCAAAATGAAATTGGAAAGATCTT
TTCTATAACTACATCATTTGAAGCATTATCAGATTTAGTGGCAGCACCTCTTTATACTTA
TGTCTATAATTCAACATACCAAACTTTTCCAGGTGCCTTTTTCTTAATAACAGCAGGTGT
ATGTGTCATTAATGTAGGTTTAGCATTTTATACAATAGCAATGAAAAGGATTCGTGAAAC
ATTAATTAATCCTTACACTATGATTGAAGATAATTAA

>g2841.t4 Gene=g2841 Length=391
MVTSIIHTVIPAILSLFLGPFSDTYGRKPILNSTFMGYALTLIAFASVCFYSEYIQPISP
WIYALCYIPETLFGGWPSLLTATLCYVTDTTEETKRPFRLLIIELIIFIGVLLGNLLCSI
ILSATNAFMVFAISATCGFFATIFIIFLVDESVNAPQQAHLYEKLTHLLSPVYIIDMIKT
CFKRRPFKERKILLSLITILMLSVFAFSGNSTIGYLFERLKFSWTLKDHNYYSSYNIIIT
IFGSVLGFGILKKIFKLSDMTLTCIALLSGLADSGLKAFATYPWHFYLISSLTLFRILSS
PMCRSLISNIIPQNEIGKIFSITTSFEALSDLVAAPLYTYVYNSTYQTFPGAFFLITAGV
CVINVGLAFYTIAMKRIRETLINPYTMIEDN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g2841.t4 Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains 2 370 3.7E-33
2 g2841.t4 PANTHER PTHR23507 ZGC:174356 2 369 6.0E-72
3 g2841.t4 PANTHER PTHR23507:SF1 ZGC:174356 2 369 6.0E-72
1 g2841.t4 Pfam PF07690 Major Facilitator Superfamily 6 334 4.2E-22
25 g2841.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
37 g2841.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 23 -
17 g2841.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 24 34 -
33 g2841.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 35 55 -
22 g2841.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 56 60 -
29 g2841.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 61 88 -
16 g2841.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 89 99 -
32 g2841.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 100 122 -
27 g2841.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 123 127 -
38 g2841.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 128 149 -
19 g2841.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 150 191 -
34 g2841.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 192 217 -
23 g2841.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 218 231 -
35 g2841.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 232 251 -
18 g2841.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 252 259 -
36 g2841.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 260 280 -
26 g2841.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 281 285 -
31 g2841.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 286 307 -
20 g2841.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 308 318 -
28 g2841.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 319 340 -
24 g2841.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 341 351 -
30 g2841.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 352 373 -
21 g2841.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 374 391 -
15 g2841.t4 ProSiteProfiles PS50850 Major facilitator superfamily (MFS) profile. 1 376 9.463
13 g2841.t4 SUPERFAMILY SSF103473 MFS general substrate transporter 8 372 2.35E-29
12 g2841.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 5 22 -
9 g2841.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 29 51 -
10 g2841.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 61 80 -
8 g2841.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 100 122 -
6 g2841.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 127 149 -
11 g2841.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 192 214 -
5 g2841.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 229 251 -
7 g2841.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 264 286 -
4 g2841.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 351 373 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055085 transmembrane transport BP
GO:0022857 transmembrane transporter activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed