Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2841 g2841.t5 TTS g2841.t5 20509304 20509304
chr_3 g2841 g2841.t5 isoform g2841.t5 20510084 20510888
chr_3 g2841 g2841.t5 exon g2841.t5.exon1 20510084 20510711
chr_3 g2841 g2841.t5 cds g2841.t5.CDS1 20510085 20510708
chr_3 g2841 g2841.t5 exon g2841.t5.exon2 20510768 20510888
chr_3 g2841 g2841.t5 TSS g2841.t5 20511152 20511152

Sequences

>g2841.t5 Gene=g2841 Length=749
ATGGATCCTAATTCACATGTTATCAATCGTGAAAATAATGAAGAAGAAGAAGTGCAAGAC
GATGATGTTGACCTAATTCTTTCGAGACCCAGTGAACAACCAAAAAGATATTTTCTGGAA
TCAAATGTTAAAACAAGCCTGTCTGCAATTTAACTATAATACATCAGTCTGTGATAATCT
GAACCAAAATGAGAGTGATAGCACATCAAAAGAAATTGAGAAAGAAGTTCAACCATACAT
TGCAAACATTAACATGGTCACTAGCATAATACATACAGTAATTCCAGCAATCCTATCATT
GTTTCTTGGACCATTCAGTGACACTTATGGTAGAAAGCCAATACTTAATTCAACATTTAT
GGGCTACGCTTTAACACTTATAGCATTTGCAAGTGTCTGCTTCTATTCTGAATACATTCA
ACCGATTTCACCGTGGATATATGCTCTATGTTACATCCCAGAAACTCTTTTTGGTGGTTG
GCCATCACTTCTTACAGCCACGTTATGCTATGTAACAGATACAACAGAAGAAACAAAAAG
ACCTTTTCGATTACTGATAATTGAACTTATCATTTTTATCGGTGTCTTGCTTGGGAACTT
ATTATGTTCAATAATATTATCAGCTACAAATGCTTTCATGGTGTTTGCAATTTCAGCTAC
TTGTGGATTTTTTGCTACAATCTTTATCATATTTCTAGTTGATGAATCAGTCAACGCACC
GCAACAAGCACATTTATATGAAAAATTAA

>g2841.t5 Gene=g2841 Length=208
MLKQACLQFNYNTSVCDNLNQNESDSTSKEIEKEVQPYIANINMVTSIIHTVIPAILSLF
LGPFSDTYGRKPILNSTFMGYALTLIAFASVCFYSEYIQPISPWIYALCYIPETLFGGWP
SLLTATLCYVTDTTEETKRPFRLLIIELIIFIGVLLGNLLCSIILSATNAFMVFAISATC
GFFATIFIIFLVDESVNAPQQAHLYEKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g2841.t5 Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains 36 206 3.9E-18
2 g2841.t5 PANTHER PTHR23507 ZGC:174356 3 201 8.4E-39
3 g2841.t5 PANTHER PTHR23507:SF1 ZGC:174356 3 201 8.4E-39
1 g2841.t5 Pfam PF07690 Major Facilitator Superfamily 42 200 9.9E-16
15 g2841.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 37 -
17 g2841.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 38 61 -
11 g2841.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 62 72 -
20 g2841.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 73 98 -
14 g2841.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 99 103 -
18 g2841.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 104 131 -
13 g2841.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 132 142 -
21 g2841.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 143 165 -
16 g2841.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 166 170 -
19 g2841.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 171 192 -
12 g2841.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 193 208 -
9 g2841.t5 SUPERFAMILY SSF103473 MFS general substrate transporter 49 198 7.85E-17
4 g2841.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 40 62 -
5 g2841.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 72 94 -
6 g2841.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 101 123 -
7 g2841.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 143 165 -
8 g2841.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 170 192 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055085 transmembrane transport BP
GO:0022857 transmembrane transporter activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values