Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2841 g2841.t6 TTS g2841.t6 20509304 20509304
chr_3 g2841 g2841.t6 isoform g2841.t6 20510084 20510888
chr_3 g2841 g2841.t6 exon g2841.t6.exon1 20510084 20510554
chr_3 g2841 g2841.t6 cds g2841.t6.CDS1 20510085 20510474
chr_3 g2841 g2841.t6 exon g2841.t6.exon2 20510656 20510710
chr_3 g2841 g2841.t6 exon g2841.t6.exon3 20510768 20510888
chr_3 g2841 g2841.t6 TSS g2841.t6 20511152 20511152

Sequences

>g2841.t6 Gene=g2841 Length=647
ATGGATCCTAATTCACATGTTATCAATCGTGAAAATAATGAAGAAGAAGAAGTGCAAGAC
GATGATGTTGACCTAATTCTTTCGAGACCCAGTGAACAACCAAAAAGATATTTTCTGGAA
TAAATGTTAAAACAAGCCTGTCTGCAATTTAACTATAATACATCAGTCTGTGATAATAAT
TCCAGCAATCCTATCATTGTTTCTTGGACCATTCAGTGACACTTATGGTAGAAAGCCAAT
ACTTAATTCAACATTTATGGGCTACGCTTTAACACTTATAGCATTTGCAAGTGTCTGCTT
CTATTCTGAATACATTCAACCGATTTCACCGTGGATATATGCTCTATGTTACATCCCAGA
AACTCTTTTTGGTGGTTGGCCATCACTTCTTACAGCCACGTTATGCTATGTAACAGATAC
AACAGAAGAAACAAAAAGACCTTTTCGATTACTGATAATTGAACTTATCATTTTTATCGG
TGTCTTGCTTGGGAACTTATTATGTTCAATAATATTATCAGCTACAAATGCTTTCATGGT
GTTTGCAATTTCAGCTACTTGTGGATTTTTTGCTACAATCTTTATCATATTTCTAGTTGA
TGAATCAGTCAACGCACCGCAACAAGCACATTTATATGAAAAATTAA

>g2841.t6 Gene=g2841 Length=130
MGYALTLIAFASVCFYSEYIQPISPWIYALCYIPETLFGGWPSLLTATLCYVTDTTEETK
RPFRLLIIELIIFIGVLLGNLLCSIILSATNAFMVFAISATCGFFATIFIIFLVDESVNA
PQQAHLYEKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g2841.t6 Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains 1 128 3.5E-9
1 g2841.t6 PANTHER PTHR23507 ZGC:174356 4 123 8.5E-18
2 g2841.t6 PANTHER PTHR23507:SF1 ZGC:174356 4 123 8.5E-18
12 g2841.t6 Phobius SIGNAL_PEPTIDE Signal peptide region 1 20 -
13 g2841.t6 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 3 -
14 g2841.t6 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 4 15 -
18 g2841.t6 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 16 20 -
11 g2841.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 21 35 -
15 g2841.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 36 53 -
8 g2841.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 54 64 -
17 g2841.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 65 87 -
10 g2841.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 88 92 -
16 g2841.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 93 114 -
9 g2841.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 115 130 -
6 g2841.t6 SUPERFAMILY SSF103473 MFS general substrate transporter 4 120 1.96E-9
4 g2841.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 23 45 -
5 g2841.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 65 87 -
3 g2841.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 92 114 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed