Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2841 g2841.t7 TTS g2841.t7 20509304 20509304
chr_3 g2841 g2841.t7 isoform g2841.t7 20510084 20511806
chr_3 g2841 g2841.t7 exon g2841.t7.exon1 20510084 20510612
chr_3 g2841 g2841.t7 cds g2841.t7.CDS1 20510085 20510579
chr_3 g2841 g2841.t7 exon g2841.t7.exon2 20510768 20511806
chr_3 g2841 g2841.t7 TSS g2841.t7 NA NA

Sequences

>g2841.t7 Gene=g2841 Length=1568
TTTTAAATTGATTTTTATATCAATTTCTCTGTTTATCCAATAAAATATCACAAAAAAATC
TTGCCGACGACCGCGAGTGATGAGAGAGAAAATACGAGGGTATAATTCTAAGCATACATG
CTCACAGCTTTAGACATTCATTTAAAATCAAATAAATCGTTGATGGCACCAAAATTTTCT
TTTTCACTTTTGATATCTTATCATCATGTTTTGATGACTTTCACTAAATTATTATCATCA
AATTAGAAATTTTATCTTTAATTATTGATATCAATATTTAAGGCTTATAATGTAATCAAA
TGATTTTTTTGTTCAGAATCAACTTCTAGCGATTGCAATTGATAAGAATAGCTGAAAGAA
ATCATTCAATAAATTTTAGGGTCTTTGTTATTTTAATACATTAATAAATTTTATTTATTT
AAGTTCGTTATTTCAAATTCTTCTCACGTGATGCTGAAATTGCCATTTATTTATCTATCA
TTTTTAGAGAAAATGTATCATATGCGTATGATAATAATATGATATAAAGTTAATGAATGT
GATAAATAATATAATTAACAAGAAACATTTCTATTGAAAAATATTCTTTTTGCACTCACT
TTATGCATATCATGAAAGTAATTTGACCTTGAAAATAAAAATAATTTTTTTTCTATGAGT
GTATAAAACAGCTGAGTGTGATGTTTGTTTCACAAAAAAGCTCTTTGTTATATATTTTAC
TAAAAATTATTTTTAAATATTTTAAAGCATTGTGATTCATTGTTCTGATGACTGTATGGT
CAATTTATTGCTGATATCACATTAAACTTGAAAATAGCGTGAAAGATTAGAGAGAATTTT
AATTTTTCTTTCTTTGTTAGAGTGATGCATTCAGTATAAATTATTTCTTTAGTGTTGACA
GTTAAAAAAAAAAGTGACATGGATCCTAATTCACATGTTATCAATCGTGAAAATAATGAA
GAAGAAGAAGTGCAAGACGATGATGTTGACCTAATTCTTTCGAGACCCAGTGAACAACCA
AAAAGATATTTTCTGGAATAAAGAAGTTCAACCATACATTGCAAACATTAACATGGTCAC
TAGCATAATACATACAGTAATTCCAGCAATCCTATCATTGTTTCTTGGACCATTCAGTGA
CACTTATGGTAGAAAGCCAATACTTAATTCAACATTTATGGGCTACGCTTTAACACTTAT
AGCATTTGCAAGTGTCTGCTTCTATTCTGAATACATTCAACCGATTTCACCGTGGATATA
TGCTCTATGTTACATCCCAGAAACTCTTTTTGGTGGTTGGCCATCACTTCTTACAGCCAC
GTTATGCTATGTAACAGATACAACAGAAGAAACAAAAAGACCTTTTCGATTACTGATAAT
TGAACTTATCATTTTTATCGGTGTCTTGCTTGGGAACTTATTATGTTCAATAATATTATC
AGCTACAAATGCTTTCATGGTGTTTGCAATTTCAGCTACTTGTGGATTTTTTGCTACAAT
CTTTATCATATTTCTAGTTGATGAATCAGTCAACGCACCGCAACAAGCACATTTATATGA
AAAATTAA

>g2841.t7 Gene=g2841 Length=165
MVTSIIHTVIPAILSLFLGPFSDTYGRKPILNSTFMGYALTLIAFASVCFYSEYIQPISP
WIYALCYIPETLFGGWPSLLTATLCYVTDTTEETKRPFRLLIIELIIFIGVLLGNLLCSI
ILSATNAFMVFAISATCGFFATIFIIFLVDESVNAPQQAHLYEKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g2841.t7 Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains 2 163 5.0E-18
2 g2841.t7 PANTHER PTHR23507 ZGC:174356 2 158 7.3E-29
3 g2841.t7 PANTHER PTHR23507:SF1 ZGC:174356 2 158 7.3E-29
1 g2841.t7 Pfam PF07690 Major Facilitator Superfamily 6 157 4.3E-13
16 g2841.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
21 g2841.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 23 -
13 g2841.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 24 34 -
19 g2841.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 35 55 -
15 g2841.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 56 60 -
20 g2841.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 61 88 -
12 g2841.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 89 99 -
18 g2841.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 100 122 -
17 g2841.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 123 127 -
22 g2841.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 128 149 -
14 g2841.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 150 165 -
11 g2841.t7 ProSiteProfiles PS50850 Major facilitator superfamily (MFS) profile. 1 165 10.186
9 g2841.t7 SUPERFAMILY SSF103473 MFS general substrate transporter 8 155 3.27E-17
8 g2841.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 5 22 -
5 g2841.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 29 51 -
7 g2841.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 61 80 -
4 g2841.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 100 122 -
6 g2841.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 127 149 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055085 transmembrane transport BP
GO:0022857 transmembrane transporter activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values