Gene loci information

Transcript annotation

  • This transcript has been annotated as Dihydrolipoyl dehydrogenase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2842 g2842.t1 TSS g2842.t1 20511705 20511705
chr_3 g2842 g2842.t1 isoform g2842.t1 20511806 20513635
chr_3 g2842 g2842.t1 exon g2842.t1.exon1 20511806 20511847
chr_3 g2842 g2842.t1 cds g2842.t1.CDS1 20511806 20511847
chr_3 g2842 g2842.t1 exon g2842.t1.exon2 20511981 20512071
chr_3 g2842 g2842.t1 cds g2842.t1.CDS2 20511981 20512071
chr_3 g2842 g2842.t1 exon g2842.t1.exon3 20512136 20513361
chr_3 g2842 g2842.t1 cds g2842.t1.CDS3 20512136 20513361
chr_3 g2842 g2842.t1 exon g2842.t1.exon4 20513423 20513512
chr_3 g2842 g2842.t1 cds g2842.t1.CDS4 20513423 20513512
chr_3 g2842 g2842.t1 exon g2842.t1.exon5 20513570 20513635
chr_3 g2842 g2842.t1 cds g2842.t1.CDS5 20513570 20513635
chr_3 g2842 g2842.t1 TTS g2842.t1 20513825 20513825

Sequences

>g2842.t1 Gene=g2842 Length=1515
ATGCAAGCAAACATTAGACAAGTTGCTTCATTATTTTCAAAGCTAAATATCAATACAATC
CATCGTTCAGCCGCTGTACTTCAATGTCGTGCTTATTCGACAACGCATGATGCCGATTTA
GTTGTTATTGGAGGTGGTCCAGGAGGATATGTCGCAGCAATTAAGGGCGCTCAAGTTGGA
CTTAACACAGTTTGTATTGAAAAGAATGATACACTCGGTGGCACTTGTCTCAATGTTGGA
TGCATTCCTTCAAAAGCTCTTCTCAACAACTCGCATTATTATCATATGGCACACTCTGGT
GACCTCAATAATCGCGGTATCACTGTTGGAAATGTGTCATTAGACTTGGAGAAAATGATG
GGTCAAAAGTCAAACGCCGTAAAGTCACTGACCGGAGGAATTGCACAGTTATTTAAAAAG
AACAAAGTTACACATCTCAACGGTTGGGGACAAATCACAGGTCCAAATCAAGTTCAAGCA
AAAATGAAGGATGGTTCAGTCGAGACAGTAAATACAAAATACATGATCATTGCTAGCGGT
TCTGAAGTCACACCTTTCCCAGGAGTAACAATTGATGAGGAAGTTATTGTGTCAAGTACT
GGTGCTTTGAGTTTAAAACAAGTTCCTAAGAAAATGGTCGTAATTGGAGCTGGTGTTATT
GGTCTCGAATTAGGATCAGTTTGGTCACGTCTTGGCGCAGAAGTTATTGCCGTTGAATTC
TTAAATAGCATTGGAGGAGTTGGAATTGATGGTGAAGTATCAAAAACCTTCCAAAAAGTT
CTCACAAAACAAGGAATGCAATTTAGACTCGGTACAAAAGTGACTGGTGCACAACGTACT
GGCAATGGAGCTGTAGTCTCAGTCGAATCAGTAAAAGACGGTTCAAAGGAAGATATTGAA
TGTGATGTTCTTCTTGTTTGTATTGGTCGTCGTCCATTTACAGAAGGATTAGGTCTCGAA
AATGTTGGAATTGCAACTGACGATCGTGGTAGAATCCCTGTTAATGCAATGCTTCAAACT
ATTGTACCTAATATTCATGCAATCGGCGATGTAATTCATGGACCTATGTTGGCGCACAAA
GCTGAAGATGAGGGAATAATCTGTGTTGAAGGAATTATGGGTGGTCACGTACATCTTGAT
TATAATTGTGTGCCCTCAGTTGTATATACACATCCAGAAGTTGCATGGGTTGGAAAATCT
GAAGAGGATCTGAAAAAAGAAGGAGTCGAATACAAAGTTGGCAAATTTCCATACATGGCA
AACTCTCGTGCTAAGACAAATAATGAAACAGACGGATTTGTAAAAGTTCTTGCCGACAAA
GCAACAGACCGCATTTTGGGAACACATATGATCGGACCGGGTGTGGGAGAATTAATAAAT
GAAGCTGTTTTGGCTATGGAATATGGTGCATCGGCAGAAGATGTTGCACGAGTGTGTCAC
GCTCATCCTACCTGTGCTGAAGCTCTGAGAGAAGCAAATCTGGCTGCATATATCGGTAAA
CCAATTAACTTCTAA

>g2842.t1 Gene=g2842 Length=504
MQANIRQVASLFSKLNINTIHRSAAVLQCRAYSTTHDADLVVIGGGPGGYVAAIKGAQVG
LNTVCIEKNDTLGGTCLNVGCIPSKALLNNSHYYHMAHSGDLNNRGITVGNVSLDLEKMM
GQKSNAVKSLTGGIAQLFKKNKVTHLNGWGQITGPNQVQAKMKDGSVETVNTKYMIIASG
SEVTPFPGVTIDEEVIVSSTGALSLKQVPKKMVVIGAGVIGLELGSVWSRLGAEVIAVEF
LNSIGGVGIDGEVSKTFQKVLTKQGMQFRLGTKVTGAQRTGNGAVVSVESVKDGSKEDIE
CDVLLVCIGRRPFTEGLGLENVGIATDDRGRIPVNAMLQTIVPNIHAIGDVIHGPMLAHK
AEDEGIICVEGIMGGHVHLDYNCVPSVVYTHPEVAWVGKSEEDLKKEGVEYKVGKFPYMA
NSRAKTNNETDGFVKVLADKATDRILGTHMIGPGVGELINEAVLAMEYGASAEDVARVCH
AHPTCAEALREANLAAYIGKPINF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
21 g2842.t1 Gene3D G3DSA:3.50.50.60 - 39 366 4.2E-121
22 g2842.t1 Gene3D G3DSA:3.50.50.60 - 184 308 4.2E-121
23 g2842.t1 Gene3D G3DSA:3.30.390.30 - 381 504 2.8E-48
3 g2842.t1 PANTHER PTHR22912:SF151 DIHYDROLIPOYL DEHYDROGENASE, MITOCHONDRIAL 35 504 9.0E-225
4 g2842.t1 PANTHER PTHR22912 DISULFIDE OXIDOREDUCTASE 35 504 9.0E-225
24 g2842.t1 PIRSF PIRSF000350 Hg-II_reductase_MerA 8 497 1.8E-87
17 g2842.t1 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 39 61 1.1E-78
9 g2842.t1 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 40 59 9.4E-34
14 g2842.t1 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 72 87 1.1E-78
7 g2842.t1 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 172 190 9.4E-34
10 g2842.t1 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 175 184 1.1E-78
5 g2842.t1 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 211 229 9.4E-34
15 g2842.t1 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 211 236 1.1E-78
8 g2842.t1 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 301 317 9.4E-34
18 g2842.t1 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 302 316 1.1E-78
6 g2842.t1 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 330 352 9.4E-34
16 g2842.t1 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 345 352 1.1E-78
11 g2842.t1 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 380 401 1.1E-78
13 g2842.t1 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 445 460 1.1E-78
12 g2842.t1 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 467 487 1.1E-78
1 g2842.t1 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 39 365 5.7E-65
2 g2842.t1 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 384 492 3.6E-41
25 g2842.t1 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 73 83 -
20 g2842.t1 SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain 34 402 1.13E-61
19 g2842.t1 SUPERFAMILY SSF55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain 380 496 2.75E-44
26 g2842.t1 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 38 502 1.0E-160

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004148 dihydrolipoyl dehydrogenase activity MF
GO:0050660 flavin adenine dinucleotide binding MF
GO:0016668 oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor MF
GO:0055114 NA NA
GO:0045454 cell redox homeostasis BP
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values