General information for g2860.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2860 is located on chr_3: 20731829..20732803 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2860 | g2860.t5 | isoform | g2860.t5 | 20726982 | 20730205 |
| chr_3 | g2860 | g2860.t5 | exon | g2860.t5.exon1 | 20726982 | 20727272 |
| chr_3 | g2860 | g2860.t5 | cds | g2860.t5.CDS1 | 20726982 | 20727272 |
| chr_3 | g2860 | g2860.t5 | exon | g2860.t5.exon2 | 20727360 | 20727732 |
| chr_3 | g2860 | g2860.t5 | cds | g2860.t5.CDS2 | 20727360 | 20727732 |
| chr_3 | g2860 | g2860.t5 | exon | g2860.t5.exon3 | 20727919 | 20728145 |
| chr_3 | g2860 | g2860.t5 | cds | g2860.t5.CDS3 | 20727919 | 20728133 |
| chr_3 | g2860 | g2860.t5 | exon | g2860.t5.exon4 | 20730109 | 20730205 |
| chr_3 | g2860 | g2860.t5 | TSS | g2860.t5 | 20730325 | 20730325 |
| chr_3 | g2860 | g2860.t5 | TTS | g2860.t5 | NA | NA |
Sequences
>g2860.t5 Gene=g2860 Length=988
TTTAACCATTTAGTGCCAAAAAAATGAGTTTTGAAAATTCTCGGCTTTGACAATAGTTTG
GCCATAATAGGATAAATAGTCATATTGTGGTTATAGTTCTTCTTTATCAATGGCAAACGA
CACGGCGAGTGTCATTAGTGAAAGTCGTAGTGCCTCAAGCAGAAAGTCTATGATTGTATA
TCTCGATGAAAATGGAAATCAATGCAAAGAACCGCGAGTTCGAAAAGTTGTTGGCACTCA
AGCGCGACATGTCACGGTTATTAATTATTCACGACGTCACAGAGAATCCCATTCTAGAAC
GCAACATCATGTCACAACTGTGAGTTTTCCACAGCAGCGGTTGGATCGTTCTCTGACAAG
CGCCTATTCCTATTCACCTTATTCTATGAATTATCAAACAAGTGATGCACAAAGCTATCA
AAGCAGCAGTACACCAAGTTATTTGCAAGCAGCTGCATATTCGCCACAATTTCATAATAA
TATTCCATCGCCAAATTTTATTATCACATCACCGCAGCATTTTAGTCATGCGACAAAGAC
TAATTCAATTAGATACGGATCGAATAGTGAGTTAAATAAACGAACGTCTCGCAATCAAAG
CCATGGCTATGAATTATCGCAAGACTTGATGGATAAACAAATGGAATTGTTGGAAAGAAA
ATATGGAGGAAAAATTCGAGCACAGCGTGCTGCATTGGTCATCCAAAGAGCATTTCGGCG
TTATATGTTGAATAAAAAATTTGCATCAATCCGTGCTACAGCGAATGTGAAAACTGAGAA
GCGAAGCTCAATTGCTAGCAGTAGTATGACGAGTTCTATAAATCAACGACTCTCCCAAAG
CCAATCAATGGAAATGTACGGAATAAATTATCAACAACAGCATCAACTTCAAAATAATGA
ACAACGATCACCAGCAACTATCAATGCTCCATATGATCAACGTACTCTTATGAGTCCAAA
TTCACCTCAGTTACGTAATTCAATAATT
>g2860.t5 Gene=g2860 Length=293
MANDTASVISESRSASSRKSMIVYLDENGNQCKEPRVRKVVGTQARHVTVINYSRRHRES
HSRTQHHVTTVSFPQQRLDRSLTSAYSYSPYSMNYQTSDAQSYQSSSTPSYLQAAAYSPQ
FHNNIPSPNFIITSPQHFSHATKTNSIRYGSNSELNKRTSRNQSHGYELSQDLMDKQMEL
LERKYGGKIRAQRAALVIQRAFRRYMLNKKFASIRATANVKTEKRSSIASSSMTSSINQR
LSQSQSMEMYGINYQQQHQLQNNEQRSPATINAPYDQRTLMSPNSPQLRNSII
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g2860.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 74 | - |
| g2860.t5 | ProSiteProfiles | PS50096 | IQ motif profile. | 191 | 219 | 6.961 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed