General information for g2869.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Arginine-hydroxylase NDUFAF5, mitochondrial.
Parent gene
- The parent gene g2869 is located on chr_3: 20807687..20812591 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2869 | g2869.t1 | TTS | g2869.t1 | 20806517 | 20806517 |
| chr_3 | g2869 | g2869.t1 | isoform | g2869.t1 | 20806542 | 20807687 |
| chr_3 | g2869 | g2869.t1 | exon | g2869.t1.exon1 | 20806542 | 20807153 |
| chr_3 | g2869 | g2869.t1 | cds | g2869.t1.CDS1 | 20806542 | 20807153 |
| chr_3 | g2869 | g2869.t1 | exon | g2869.t1.exon2 | 20807207 | 20807462 |
| chr_3 | g2869 | g2869.t1 | cds | g2869.t1.CDS2 | 20807207 | 20807462 |
| chr_3 | g2869 | g2869.t1 | exon | g2869.t1.exon3 | 20807536 | 20807687 |
| chr_3 | g2869 | g2869.t1 | cds | g2869.t1.CDS3 | 20807536 | 20807687 |
| chr_3 | g2869 | g2869.t1 | TSS | g2869.t1 | 20807722 | 20807722 |
Sequences
>g2869.t1 Gene=g2869 Length=1020
ATGTTTTTAAATCGCAATTTAATTAAATGTCGCTCAATATTCACAAGTGTAAAGCATTTA
AGGCCAATAGGAAATGTACATCAATCTAGTGATGTGAATATATTTGATGTTTTTAATGCA
AAACGATTGCAAAAGGAGAGAGCGGCGAAAAGAGATGATGTGGAAACATACGATTACATC
AAAGAAGAAGTTGGATTCCGATTGTCAGATCGATTATTTGATATCAAGAAAGAGTTGAAG
AATGCTGTTGATTTTGGTGGAGGAAGAGGCTATTTATCGAAAAATATTTTAGCAGAAACA
GCACAAAATCTTAAAATTTATGATATAAGTGAAACAATGCTTGAACAAGCAACAGGAACT
CCTGGTGTGGAAATTGAAAAGCATTTACTCACAAATGAGTATTTAGATCTTCCTGAAAAT
AGTCAAGATGTAGTAATATCAAATCTAGCTCTTCATTGGTTTAATGATCTTCCTGGAGTG
TTTAGATCAATTAATAGATGCTTAAAACCTGATGGTGTATTCTTAGCATCACTTTTTGGT
GGTGAAACATTATATGAGTTACGATCAACACTTCATTTAGCTGAAGCAGAGAGATTTGGC
GGCCTCTCACCACACATTTCTCCTTTCACTCAAATCAGAGATATTGGTGGATTACTCAAT
AGCTCAGGTTTCACAATGCTCACAATTGACACCGATGAAATGGTGATTGGTTATCCAAGC
ATTTTTGAACTTCTTCAAGATCTCAAAGGCATGGCTGAAAATAATGCAGCATTCAACAGG
CCACTCACATTGAGTCGTGATGTTTTGCTATCAGCAGCTGCAATTTATAAAGAAATGTAC
AAGAAAACTCATCCTGAAACTAAAGAAGAAGGTATTCATGCAACATTTCAAGTCATTTAT
TTAGTTGGATGGAAACCACATGAAAGTCAGCAAAAACCAGCAGAAAGAGGTTCAGCAAAT
GTCTCATTTAAAGATTTAGGAAAAATCATGACTGAGAAAAAAGATAAAAAAGTAGAATAA
>g2869.t1 Gene=g2869 Length=339
MFLNRNLIKCRSIFTSVKHLRPIGNVHQSSDVNIFDVFNAKRLQKERAAKRDDVETYDYI
KEEVGFRLSDRLFDIKKELKNAVDFGGGRGYLSKNILAETAQNLKIYDISETMLEQATGT
PGVEIEKHLLTNEYLDLPENSQDVVISNLALHWFNDLPGVFRSINRCLKPDGVFLASLFG
GETLYELRSTLHLAEAERFGGLSPHISPFTQIRDIGGLLNSSGFTMLTIDTDEMVIGYPS
IFELLQDLKGMAENNAAFNRPLTLSRDVLLSAAAIYKEMYKKTHPETKEEGIHATFQVIY
LVGWKPHESQQKPAERGSANVSFKDLGKIMTEKKDKKVE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g2869.t1 | CDD | cd02440 | AdoMet_MTases | 81 | 179 | 6.7e-06 |
| 4 | g2869.t1 | Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 71 | 296 | 0.0e+00 |
| 2 | g2869.t1 | PANTHER | PTHR13090 | UNCHARACTERIZED | 28 | 333 | 0.0e+00 |
| 1 | g2869.t1 | Pfam | PF13489 | Methyltransferase domain | 67 | 228 | 0.0e+00 |
| 3 | g2869.t1 | SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 57 | 306 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K18162 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5 [EC:2.1.1.-])
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
